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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgcatgggtctctttctctctctctctctctccttggctgttctctgttcaccaccgtcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG

Basic information

species Zea mays
transcript GRMZM2G079127_T01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38688015|gb|CK145046.1|CK145046
EST:     CGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: CGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|71332251|gb|DR803050.1|DR803050
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|110961621|gb|EE181673.1|EE181673
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|71300369|gb|DR786249.1|DR786249
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|71330476|gb|DR802003.1|DR802003
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|91053693|gb|EB164111.1|EB164111
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|50323474|gb|CO518600.1|CO518600
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|74239733|gb|DT647647.1|DT647647
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|50330561|gb|CO525687.1|CO525687
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|89760887|gb|DY689118.1|DY689118
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|86470695|gb|DY237065.1|DY237065
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|149016902|gb|EE154294.2|EE154294
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|89757507|gb|DY687077.1|DY687077
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|44901502|gb|CK828047.1|CK828047
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|71759048|gb|DR956985.1|DR956985
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|86466036|gb|DY232409.1|DY232409
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|110530888|gb|EE035072.1|EE035072
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|76011049|gb|DT938219.1|DT938219
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|148954453|gb|EC899877.2|EC899877
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|74236597|gb|DT644511.1|DT644511
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|71300939|gb|DR786498.1|DR786498
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|148934685|gb|EC878733.2|EC878733
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|78115936|gb|DV534324.1|DV534324
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|148943053|gb|EC888103.2|EC888103
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|50329273|gb|CO524399.1|CO524399
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|29946163|gb|CB816011.1|CB816011
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|148997916|gb|EE035904.2|EE035904
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|50330890|gb|CO526016.1|CO526016
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|148944005|gb|EC889088.2|EC889088
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|76924865|gb|DV170168.1|DV170168
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|91873710|gb|EB403667.1|EB403667
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|149037205|gb|EE155291.2|EE155291
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|149023506|gb|EE154507.2|EE154507
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|38688052|gb|CK145083.1|CK145083
EST:     AGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: AGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|94479194|gb|EB708152.1|EB708152
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|71433831|gb|DR814881.1|DR814881
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|94479872|gb|EB708830.1|EB708830
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
EST: gi|148970948|gb|EE021755.2|EE021755
EST:     GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAG                         GGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT
genomic: GCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 48 (downstream exon)
Score: 123

CTGGCAGAGCGTCGTCGCCTACGTTAACATCACTTCGTACTACCTCATCGGCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 85

CTGGCAGAGCGTCGTCGCCTACGTTAACATCACTTCGTACTACCTCATCGGCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 47

CTGGCAGAGCGTCGTCGCCTACGTTAACATCACTTCGTACTACCTCATCGGCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG


Block sizes: 43 (upstream exon), 49 (downstream exon)
Score: 64

CTGGCAGAGCGTCGTCGCCTACGTTAACATCACTTCGTACTACCTCATCGGCATCCCTCTTGGAGCCGTGCTGGGCTACGCGCTGGGGCTTCATGTGAAGgtactgcatg ... tcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtactgcatgggtctctttctctctctctctctctccttggctgttctctgttcaccaccgtcgtacgcagGGCATCTGGATCGGCATGCTGCTCGGAACGCTGGTCCAGACTGTTGTGCTTCTCTTCATAACGTTGAAGACCGACTGGGAAAAACAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA