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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taaaaagaaacggagggagtatataacagctgccattgggcgctagtattgcttatggattaatatttatcttgtgtaattcgcttattttgccaatcagATCAAGAAGGCATTGCGGGGTGTAAAAGTTGAGGTCACTCACCGGGGGAATGTACGGCGCAAGTATCGCATTTCAGGCCTCACAACACAGCCAACTCATG

Basic information

species Zea mays
transcript GRMZM2G079080_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G079080_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os06g39640.1 (Oryza sativa), 3'ss of exon 5
-------------------------------------------taaaaagaaacggagggagtatataacagctgccattgggcg-ctagta--ttgctta--tggattaatatttatc-ttgtgtaattcgcttat----tttgccaat------cagATCAAGAAGGCATTGCGGGGTGTAAAAGTTGAGGTCACTCACCGGGGGAATGTACGGCGCAAGTATCGCATTTCAGGCCTCACAACACAGCCAACTCATG
                                           |  |  |  | | | |  || |      | |||  ||||    ||  ||  | |||||  ||   |  | |  ||  || | | |||  | | |    || ||||||      ||||||||||| || |||||||| || |||||||| |||||||||||||| |||||  |||| ||||||||||||||||| || |||||||| ||||||||||
gtaaatttatgcttgcggggaaggaatagtctagccttgttactgtagtgggatgtaagatgtgttgtttggatgcttttggttaactgatagatggcttaattgtgatgctttgcatgattatctgatttacctgtggaattcgccaattccatgcagATCAAGAAAGCCTTGCGGGGCGTGAAAGTTGAAGTCACTCACCGGGGAAATGTGAGGCGGAAGTATCGCATTTCAGGGCTGACAACACAACCAACTCATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattgcttatggattaatatttatcttgtgtaattcgcttattttgccaatcagATCAAGAAGGCATTGCGGGGTGTAAAAGTTGAGGTCACTCACCGGGGGAATGTACGGCGCAAGTATCGCATTTCAGGCCTCACAACACAGCCAACTCATG
            gattaat  putative branch site (score: 3)
                                      cttatttt  putative PPT
             attaatatttatcttg  TA-rich tract