1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gttataatttaatcattgttatgattagctgtgtcttgtttatttgatgattttccttcataaaggaagttcccaaataatgttgcctttctattgccagCTTGACAGAAATTCAGAATGCACGTGGGGTCATGGATGTTCTTTCAGAGATGTTAAATGCTATCGATCCTGGTAACAGAGAG
species | Zea mays |
transcript | GRMZM2G077844_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGACATGATGTGCCTGAATCCTCTTCTGCACCAGAAGTGCCTGCATTAAG CTTGACAGAAATTCAGAATGCACGTGGGGTCATGGATGTTCTTTCAGAGATEST: gi|78103934|gb|DV522352.1|DV522352
genomic: CGACATGATGTGCCTGAATCCTCTTCTGCACCAGAAGTGCCTGCATTAAGgtacattgct ... ctattgccagCTTGACAGAAATTCAGAATGCACGTGGGGTCATGGATGTTCTTTCAGAGAT
EST: CGACATGATGTGCCTGAATCCTCTTCTGCACCAGAAGTGCCTGCATTAAG CTTGACAGAAATTCAGAATGCACGTGGGGTCATGGATGTTCTTTCAGAGATEST: gi|78118618|gb|DV537002.1|DV537002
genomic: CGACATGATGTGCCTGAATCCTCTTCTGCACCAGAAGTGCCTGCATTAAGgtacattgct ... ctattgccagCTTGACAGAAATTCAGAATGCACGTGGGGTCATGGATGTTCTTTCAGAGAT
EST: CGACATGATGTGCCTGAATCCTCTTCTGCACCAGAAGTGCCTGCATTAAG CTTGACAGAAATTCAGAATGCACGTGGGGTCATGGATGTTCTTTCAGAGAT
genomic: CGACATGATGTGCCTGAATCCTCTTCTGCACCAGAAGTGCCTGCATTAAGgtacattgct ... ctattgccagCTTGACAGAAATTCAGAATGCACGTGGGGTCATGGATGTTCTTTCAGAGAT
gatgattttccttcataaaggaagttcccaaataatgttgcctttctattgccagCTTGACAGAAATTCAGAATGCACGTGGGGTCATGGATGTTCTTTCAGAGATGTTAAATGCTATCGATCCTGGTAACAGAGAG
atttgat putative branch site (score: 116)
ttgcctttct putative PPT
aaataatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttataatttaatcattgttatgattagctgtgtcttgtttatttgatgattttccttcataaaggaagttcccaaataatgttgcctttctattgccagCTTGACAGAAATTCAGAATGCACGTGGGGTCATGGATGTTCTTTCAGAGATGTTAAATGCTATCGATCCTGGTAACAGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - agctgtg
- - - - - - - - - - - - - - - - - cttgttt
- - - - - - - - - - - - - - - - - - - - - tttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaggaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgcc