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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacacctcgacggaaacgaaaccgctccccccacgtctctctcctccctggcgcttgcatttgcatctctctgtgtatctgagtgtgatccgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCGCTCGTCAAGTCGAGCCTGGACATCGTGGTGGCCGTGGGGCTCCTGCAGC

Basic information

species Zea mays
transcript GRMZM2G077837_T05
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78116810|gb|DV535197.1|DV535197
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|9953197|gb|BE639780.1|BE639780
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAATCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|71450311|gb|DR831361.1|DR831361
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|110195280|gb|EC877177.1|EC877177
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|18181086|gb|BM382290.1|BM382290
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|71764189|gb|DR962126.1|DR962126
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|78023493|gb|DV491880.1|DV491880
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAATCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|85152337|gb|DW587699.1|DW587699
EST:     GTCGATGAAGAAGCTGGAGAAGGAGCTNGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: GTCGATGAAGAAGCTGGAGAAGGAGCT-GAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|78075164|gb|DV503598.1|DV503598
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|76912912|gb|DV164929.1|DV164929
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|88756034|gb|DY540175.1|DY540175
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|60346992|gb|DN213965.1|DN213965
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|149098138|gb|EE184098.2|EE184098
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|71316211|gb|DR794781.1|DR794781
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|4804469|gb|AI665339.2|AI665339
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAATCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|60350607|gb|DN217580.1|DN217580
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|5468689|gb|AI834480.1|AI834480
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAATCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|60347782|gb|DN214755.1|DN214755
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|211390328|gb|FK948909.1|FK948909
EST:     GATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: GATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|50339087|gb|CO534213.1|CO534213
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|149041288|gb|EE046924.2|EE046924
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|4647533|gb|AI622608.1|AI622608
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCCCCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|9953196|gb|BE639779.1|BE639779
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCGCAAATCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|211109679|gb|FL338746.1|FL338746
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|38502634|gb|CF972494.1|CF972494
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|149099025|gb|EE185041.2|EE185041
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|71762408|gb|DR960345.1|DR960345
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|78085911|gb|DV514304.1|DV514304
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|18179310|gb|BM380520.1|BM380520
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|148933476|gb|EC877178.2|EC877178
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|110965140|gb|EE185040.1|EE185040
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|149009633|gb|EE041581.2|EE041581
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|211033503|gb|FL333365.1|FL333365
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|88748308|gb|DY532449.1|DY532449
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|71595770|gb|DR906521.1|DR906521
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|88755300|gb|DY539441.1|DY539441
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGGTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|78083475|gb|DV511868.1|DV511868
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|5525273|gb|AI861112.1|AI861112
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|50339088|gb|CO534214.1|CO534214
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGC
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGC
EST: gi|16917203|gb|BM073180.1|BM073180
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|5124075|gb|AI745916.1|AI745916
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAATCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|149074443|gb|EE162835.2|EE162835
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|78076752|gb|DV505186.1|DV505186
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|88755301|gb|DY539442.1|DY539442
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|78076751|gb|DV505185.1|DV505185
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
EST: gi|149098139|gb|EE184099.2|EE184099
EST:     CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG                         AACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG
genomic: CGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAGgtacacctcg ... cgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacacctcgacggaaacgaaaccgctccccccacgtctctctcctccctggcgcttgcatttgcatctctctgtgtatctgagtgtgatccgtgtgccagAACGAGCAGTACCGCATGAAGCTGCACAAGTCGAACGAGCGGCTGCTGGCGCTCGTCAAGTCGAGCCTGGACATCGTGGTGGCCGTGGGGCTCCTGCAGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG