Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtgcgtgcgtctctgtctcgagtgccgtattatctcgtgtttccgcacctgattcatgctccaagccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG

Basic information

species Zea mays
transcript GRMZM2G077837_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G077837_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os06g03660.1 (Oryza sativa), 3'ss of exon 7
-----------------gt-gcgtgcgtgcgtctctgtctcgagtgccgt-attatctcgtgtttccgcacctgattcatgctccaagccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG
                 || |  |   |      ||| | |   |    | |  |||  | |  | | || |||| |  |  | ||     | ||| |||||||||| || ||||| |||| |||||||||||| || ||||||||||| || ||||| |||||||  |||
gtatgagacttcagactgtagaatctatttaatcctgcccctgatattattacaatcaagagaatac-catctgactagtatttcat----tatagGTAGCCGAGCTTCAGCGGCTATCCAAGTCGATGAAGAAACTAGAGAAGGAGCTTAAACACCAGGAGCTGTTAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32909682|gb|CF014494.1|CF014494
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|149041288|gb|EE046924.2|EE046924
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|211033503|gb|FL333365.1|FL333365
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|9953197|gb|BE639780.1|BE639780
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTTCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|33285608|gb|CF075403.1|CF075403
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGNCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|110195280|gb|EC877177.1|EC877177
EST:     TAGCGTTCTACTGCTTCTTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|28188052|gb|CB179662.1|CB179662
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|18181086|gb|BM382290.1|BM382290
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|78085911|gb|DV514304.1|DV514304
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|71764189|gb|DR962126.1|DR962126
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|78023493|gb|DV491880.1|DV491880
EST:     TAGCGTTTTACTGCTTCCTGGGCTCCAACACCTTCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|85152337|gb|DW587699.1|DW587699
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|108824089|gb|EC278097.1|EC278097
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTTCCACGTTCGATGAAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGT-CCACGT-CGATGAAG
EST: gi|149098139|gb|EE184099.2|EE184099
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|29947510|gb|CB816693.1|CB816693
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|76912912|gb|DV164929.1|DV164929
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|71450311|gb|DR831361.1|DR831361
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|211098758|gb|FL338286.1|FL338286
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|60346992|gb|DN213965.1|DN213965
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|149098138|gb|EE184098.2|EE184098
EST:     TAGCGTTTTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|211038400|gb|FL333394.1|FL333394
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|32914774|gb|CF019586.1|CF019586
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCT
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCT
EST: gi|71316211|gb|DR794781.1|DR794781
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|87155839|gb|DY400628.1|DY400628
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTTCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|4804469|gb|AI665339.2|AI665339
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTTCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|60350607|gb|DN217580.1|DN217580
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|5468689|gb|AI834480.1|AI834480
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTTCGCGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCCCGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|71319203|gb|DR796357.1|DR796357
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|149074443|gb|EE162835.2|EE162835
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|6827204|gb|AW330847.1|AW330847
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|50339088|gb|CO534214.1|CO534214
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|148966007|gb|EE016939.2|EE016939
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|211410031|gb|FL353826.1|FL353826
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGC
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGC
EST: gi|60347782|gb|DN214755.1|DN214755
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|50339087|gb|CO534213.1|CO534213
EST:     CTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: CTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|148933476|gb|EC877178.2|EC877178
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|211474582|gb|FL313880.1|FL313880
EST:     AGCGTTCTACTGCTTCCTCGGCNTC-AACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: AGCGTTCTACTGCTTCCTCGGC-TCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|78075164|gb|DV503598.1|DV503598
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|4647533|gb|AI622608.1|AI622608
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|9953196|gb|BE639779.1|BE639779
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTTCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|78085399|gb|DV513792.1|DV513792
EST:     AGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCCATCATCGAG                         CTAGCCCGAGCTGCAACGGCTGT
genomic: AGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCC-ATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCC-GAGCTGCAACGGCTGT
EST: gi|71762408|gb|DR960345.1|DR960345
EST:     TAGCGTTCTACTGCTTCTTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|18179310|gb|BM380520.1|BM380520
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|37361166|gb|CF602455.1|CF602455
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|110965140|gb|EE185040.1|EE185040
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|88748308|gb|DY532449.1|DY532449
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|28910735|gb|CB331587.1|CB331587
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|148973337|gb|EE024425.2|EE024425
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|108953048|gb|EC364559.1|EC364559
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|37361333|gb|CF602622.1|CF602622
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|71595770|gb|DR906521.1|DR906521
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|149099025|gb|EE185041.2|EE185041
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|88755300|gb|DY539441.1|DY539441
EST:     TACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|38502634|gb|CF972494.1|CF972494
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|5525273|gb|AI861112.1|AI861112
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|56382727|gb|CV985396.1|CV985396
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAA
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAA
EST: gi|16917203|gb|BM073180.1|BM073180
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|47961769|gb|CN844478.1|CN844478
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|5124075|gb|AI745916.1|AI745916
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTTCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|22133593|gb|BQ833791.1|BQ833791
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTTCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAAGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|149101178|gb|EE187288.2|EE187288
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|149009633|gb|EE041581.2|EE041581
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|88755301|gb|DY539442.1|DY539442
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|78083475|gb|DV511868.1|DV511868
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|211109679|gb|FL338746.1|FL338746
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|211462848|gb|FL343991.1|FL343991
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|78076751|gb|DV505185.1|DV505185
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|149083755|gb|EE173117.2|EE173117
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCGACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
EST: gi|71306784|gb|DR789549.1|DR789549
EST:     TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAG                         CTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG
genomic: TAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 174

AACAAGGAGCGGGCGGAGTTTCTCGGGAGGATAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 180

AACAAGGAGCGGGCGGAGTTTCTCGGGAGGATAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 196

AACAAGGAGCGGGCGGAGTTTCTCGGGAGGATAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG


Block sizes: 49 (upstream exon), 45 (downstream exon)
Score: 109

AACAAGGAGCGGGCGGAGTTTCTCGGGAGGATAGCGTTCTACTGCTTCCTCGGCTCCAACACCTGCACGGCCATCATCGAGgtgcgtgcgt ... agccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgagtgccgtattatctcgtgtttccgcacctgattcatgctccaagccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG
                            acctgat  putative branch site (score: 109)
         tattatct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcgtgcgtgcgtctctgtctcgagtgccgtattatctcgtgtttccgcacctgattcatgctccaagccgtgtagCTAGCCGAGCTGCAACGGCTGTCCACGTCGATGAAGAAGCTGGAGAAGGAGCTGAAGCACCAAGAGCTGTACAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT