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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggcatgtctcgaagctaagtttatgtatggattagtgaatcattattgtgtaatgtcattcatgttcattccaatatatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG

Basic information

species Zea mays
transcript GRMZM2G077222_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G077222_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os03g64400.1 (Oryza sativa), 3'ss of exon 5
-------gtgaggcatgtctcg---aagctaagtttat-gtatggattagtgaatcattattgtgtaatgtcattcatgttcattccaatatatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG
       | ||    |||   |   || |||  | | | |||    ||| |   |  | ||    |||||  |||  |     || ||||||  |||||||| | ||||||||||| |||||||| ||||||||||| ||||||||||||||  | ||   ||||||| |  |    ||||  |||||||| || ||  |
gtgagaagagaatagtgttgaggacaaactacatctttagtaaaatttactatgttttcatgaactaatgatatttgtacatctttcaatatgcccatagGCTTGGCAGAAGCTGGGTTGATTTCCAGCAAGCTTTCGAGATCTGATATGAACGTTCCCCTAGATGTTGACAATTTGCATAATTTGTTTTCTCCGGAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211534207|gb|FL317060.1|FL317060
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211153740|gb|FL193241.1|FL193241
EST:     TGCATTTGACGATGNCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATAT
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATAT
EST: gi|211320240|gb|FL338455.1|FL338455
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211155354|gb|FL193264.1|FL193264
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211499064|gb|FL037733.1|FL037733
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCNAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211356810|gb|FL332696.1|FL332696
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211155353|gb|FL193263.1|FL193263
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTANCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211265615|gb|FL356056.1|FL356056
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211155352|gb|FL193262.1|FL193262
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211480395|gb|FL326614.1|FL326614
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211455408|gb|FL343588.1|FL343588
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAG-AAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211130568|gb|FL330782.1|FL330782
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211012723|gb|FL335935.1|FL335935
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTA--A-GCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211133468|gb|FL349783.1|FL349783
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211464944|gb|FL327919.1|FL327919
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211356808|gb|FL332694.1|FL332694
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211155346|gb|FL193256.1|FL193256
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211155344|gb|FL193254.1|FL193254
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211280131|gb|FL354652.1|FL354652
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211239604|gb|FL338007.1|FL338007
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211155342|gb|FL193252.1|FL193252
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211025945|gb|FL329790.1|FL329790
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211432079|gb|FL309133.1|FL309133
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211287060|gb|FL337502.1|FL337502
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211086511|gb|FL340444.1|FL340444
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211143697|gb|FL324988.1|FL324988
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211243597|gb|FL313136.1|FL313136
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211155347|gb|FL193257.1|FL193257
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211153739|gb|FL193240.1|FL193240
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211153744|gb|FL193245.1|FL193245
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211096961|gb|FL367333.1|FL367333
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211478133|gb|FL352004.1|FL352004
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211453287|gb|FL343581.1|FL343581
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211153737|gb|FL193238.1|FL193238
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211465954|gb|FL364649.1|FL364649
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211183895|gb|FL345854.1|FL345854
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211153743|gb|FL193244.1|FL193244
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211163533|gb|FL327752.1|FL327752
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211155350|gb|FL193260.1|FL193260
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211153750|gb|FL193251.1|FL193251
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211093607|gb|FL328988.1|FL328988
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211308384|gb|FL348182.1|FL348182
EST:     TGAATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211297774|gb|FL337584.1|FL337584
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|31357653|gb|CD442010.1|CD442010
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211001384|gb|FL323102.1|FL323102
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211153749|gb|FL193250.1|FL193250
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTANCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGANCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211509614|gb|FL308773.1|FL308773
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211155351|gb|FL193261.1|FL193261
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211388119|gb|FL310430.1|FL310430
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211285077|gb|FL334450.1|FL334450
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211158735|gb|FL327705.1|FL327705
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211541249|gb|FL353983.1|FL353983
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211505017|gb|FL316062.1|FL316062
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
EST: gi|211175778|gb|FL359116.1|FL359116
EST:     TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAG                         GCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA
genomic: TGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 47 (downstream exon)
Score: 123

ACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 239

ACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG


Block sizes: 47 (upstream exon), 47 (downstream exon)
Score: 109

ACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 143

ACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATACAAGgtgaggcatg ... atatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attagtgaatcattattgtgtaatgtcattcatgttcattccaatatatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG
       aatcattatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgaggcatgtctcgaagctaagtttatgtatggattagtgaatcattattgtgtaatgtcattcatgttcattccaatatatccatagGCCTAGCAGAAGCTGGATTGATTTCTAGCAAGCTTTCAAGATCTGATATGAATATCCCAGAAGATGTTCATGACAATCATATCTTGTTTTCCCCTGAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG