1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...caaaaatacttcattaaagcaccattgcacacatcaaagtgttatgtgttgtgtcaaccatagtaagcaataagctgttctgattgtcataactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAGGAAGAGAATCAAGCTCAGTGCTGAGAAAGCTATCTTCATCTTTGTGAAG
species | Zea mays |
transcript | GRMZM2G076826_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAGEST: gi|211509914|gb|FL437411.1|FL437411
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAGEST: gi|18165025|gb|BM334870.1|BM334870
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGGCAAGAAAAA GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAGEST: gi|71441162|gb|DR822212.1|DR822212
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAGEST: gi|91052588|gb|EB163006.1|EB163006
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAGEST: gi|211192317|gb|FL065114.1|FL065114
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA GTACCTGGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAGEST: gi|18169711|gb|BM339551.1|BM339551
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAGEST: gi|71434664|gb|DR815714.1|DR815714
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAGEST: gi|211194714|gb|FL065125.1|FL065125
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA GTACCTGGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAGEST: gi|211192306|gb|FL065103.1|FL065103
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA GTACCTGGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAGEST: gi|16918829|gb|BM073915.1|BM073915
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAGEST: gi|32914236|gb|CF019048.1|CF019048
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAGEST: gi|16926343|gb|BM079411.1|BM079411
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAGEST: gi|91052589|gb|EB163007.1|EB163007
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAGEST: gi|6194643|gb|AW146747.1|AW146747
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA GTACCTTGTCCCTGCTGATCTTACGGTTGGACAATTCG-G-ATGTTGTTAGEST: gi|93016973|gb|EB642493.1|EB642493
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAGEST: gi|211194707|gb|FL065118.1|FL065118
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA GTACCTGGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
gtgttgtgtcaaccatagtaagcaataagctgttctgattgtcataactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAGGAAGAGAATCAAGCTCAGTGCTGAGAAAGCTATCTTCATCTTTGTGAAG
tcataac putative branch site (score: 2)
ataacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaaaatacttcattaaagcaccattgcacacatcaaagtgttatgtgttgtgtcaaccatagtaagcaataagctgttctgattgtcataactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAGGAAGAGAATCAAGCTCAGTGCTGAGAAAGCTATCTTCATCTTTGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA