Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caaaaatacttcattaaagcaccattgcacacatcaaagtgttatgtgttgtgtcaaccatagtaagcaataagctgttctgattgtcataactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAGGAAGAGAATCAAGCTCAGTGCTGAGAAAGCTATCTTCATCTTTGTGAAG

Basic information

species Zea mays
transcript GRMZM2G076826_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G076826_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os04g53240.2 (Oryza sativa), 3'ss of exon 5
---caaaaatact-tcattaaagcaccattgcacacatcaaagtgt-tatgtgttgtgtcaaccatagtaagcaataagctgttctgattgtcataactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAGGAAGAGAATCAAGCTCAGTGCTGAGAAAGCTATCTTCATCTTTGTGAAG
   | ||| |  | |   |     ||  |   |||  | | |     |||   |       ||| || | | |  ||     || ||||| || |||   |  |||||||| ||||||||||||||||| ||||| || || || ||||||||| ||||| | |||||||||||| |||||||||| ||||||||||||||||||
gctcgaaacttttgttgctctgaaactttaatacatgttacatcaagtatcaatcaatattaccgta-tcatccttagtagcttatgattttc-taa---tatagGTACCTGGTCCCTGCTGATCTTACCGTTGGGCAGTTTGTCTATGTTGTTCGGAAGCGGATCAAGCTCAGTCCTGAGAAAGCAATCTTCATCTTTGTGAAG

upper sequence: GRMZM2G076826_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv19s0090g00580.t01 (Vitis vinifera), 3'ss of exon 4
caaaaatactt---cattaaagcaccattgcacacatcaaagtgttatgtgttgtgtcaaccatagtaagcaataagctg--ttctgattgtcataactt-tgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAGGAAGAGAATCAAGCTCAGTGCTGAGAAAGCTATCTTCATCTTTGTGAAG
  |  ||  ||   ||||  |  |   |   | |    ||| |  |    |||  |   |   ||  ||  | ||  |||  |||  | | |||| |    ||||| || || || ||||||||||| || ||||| || || || |||||  |  ||||||| |||||||| ||||||||||| ||||| ||||| ||||| |||
-tagtatgttttcacattcgattattgtcttatatggtaaattcct----gtttagctgattttatcaaatattatcctgagttcctact-tcatgatcaatgcagATATCTGGTTCCTGCTGATCTGACTGTTGGGCAGTTTGTTTATGTGATCCGGAAGAGGATCAAGCTTAGTGCTGAGAAGGCTATTTTCATTTTTGTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211035126|gb|FL190210.1|FL190210
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|211509914|gb|FL437411.1|FL437411
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|211192308|gb|FL065105.1|FL065105
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGT
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGT
EST: gi|211194716|gb|FL065127.1|FL065127
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTGGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATG
EST: gi|32867201|gb|CF006883.1|CF006883
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|211192318|gb|FL065115.1|FL065115
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTGGTCCCTGCTGATCTTACGGTTGGACAATTNGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|211194714|gb|FL065125.1|FL065125
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTGGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|18165025|gb|BM334870.1|BM334870
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGGCAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|71441162|gb|DR822212.1|DR822212
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|211194719|gb|FL065130.1|FL065130
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAGAA                         GTACCTGGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|32918882|gb|CF023694.1|CF023694
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|211192306|gb|FL065103.1|FL065103
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTGGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|211192313|gb|FL065110.1|FL065110
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTTGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|32910728|gb|CF015540.1|CF015540
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTT
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTT
EST: gi|211192307|gb|FL065104.1|FL065104
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|9028809|gb|BE238849.1|BE238849
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTTGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|211194717|gb|FL065128.1|FL065128
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|78108303|gb|DV526721.1|DV526721
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|91052588|gb|EB163006.1|EB163006
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|84908620|gb|DW404498.1|DW404498
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|211168429|gb|FL208191.1|FL208191
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|16920503|gb|BM074688.1|BM074688
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|71434664|gb|DR815714.1|DR815714
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|91051619|gb|EB162037.1|EB162037
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|32914815|gb|CF019627.1|CF019627
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|211168428|gb|FL208190.1|FL208190
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|211192309|gb|FL065106.1|FL065106
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|93016974|gb|EB642494.1|EB642494
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|18169711|gb|BM339551.1|BM339551
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|211192317|gb|FL065114.1|FL065114
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTGGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|16918829|gb|BM073915.1|BM073915
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|32909263|gb|CF014075.1|CF014075
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|60337001|gb|DN203974.1|DN203974
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|16926343|gb|BM079411.1|BM079411
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|74035341|gb|DT535830.1|DT535830
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|91875567|gb|EB405524.1|EB405524
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|211194706|gb|FL065117.1|FL065117
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTGGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|211192311|gb|FL065108.1|FL065108
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTGGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|211194707|gb|FL065118.1|FL065118
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTGGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|91052589|gb|EB163007.1|EB163007
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|86856043|gb|DY307054.1|DY307054
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|211168430|gb|FL208192.1|FL208192
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|6194643|gb|AW146747.1|AW146747
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTTGTCCCTGCTGATCTTACGGTTGGACAATTCG-G-ATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|211194715|gb|FL065126.1|FL065126
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|101398764|gb|EB821254.1|EB821254
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGGACAATTCGTGTATGTTGTTA
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGG-ACAATTCGTGTATGTTGTTA
EST: gi|211197111|gb|FL065133.1|FL065133
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACRAGAAAAA                         GTACCTGGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|211194712|gb|FL065123.1|FL065123
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTGGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|78108000|gb|DV526418.1|DV526418
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|101394743|gb|EB819304.1|EB819304
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|93016973|gb|EB642493.1|EB642493
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|32862788|gb|CF002470.1|CF002470
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|71441163|gb|DR822213.1|DR822213
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|211197112|gb|FL065134.1|FL065134
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTTGTCCCTGCTGATCTTACGGGNTGGACAATTCGTGTATGTTG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGT-TGGACAATTCGTGTATGTTG
EST: gi|32936588|gb|CF041407.1|CF041407
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|211194708|gb|FL065119.1|FL065119
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
EST: gi|78108001|gb|DV526419.1|DV526419
EST:     ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAA                         GTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG
genomic: ATTGTTGAGAAGGCTGAGAGGAGTGACATTCCTGACATCGACAAGAAAAAgtcagttctc ... aactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttgtgtcaaccatagtaagcaataagctgttctgattgtcataactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAGGAAGAGAATCAAGCTCAGTGCTGAGAAAGCTATCTTCATCTTTGTGAAG
                                         tcataac  putative branch site (score: 2)
                                           ataacttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
caaaaatacttcattaaagcaccattgcacacatcaaagtgttatgtgttgtgtcaaccatagtaagcaataagctgttctgattgtcataactttgcagGTACCTCGTCCCTGCTGATCTTACGGTTGGACAATTCGTGTATGTTGTTAGGAAGAGAATCAAGCTCAGTGCTGAGAAAGCTATCTTCATCTTTGTGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
-aaaaata
- - - - - - - - - - - cattgca
- - - - - - - - - - - - - - - -catcaaa
- - - - - - - - - - - - - - - - - - - - - - tgtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - -tcaacca