1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aggctgcaacaccgtctagtggaggtagataaggcatcaaaattgtatttttatttgcaaatgtagcaacaatatactaatttgatgtacttttttctagGGTTCTGGACAAAGAAAGCTTGTACCTTAAAACAGGAGGATACAAGAAGCTGGAGTGGTTGTCTGAAGGCTTTTGAACTGCTTGAAGCATTAGTGTAGCT
species | Zea mays |
transcript | GRMZM2G076337_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TAAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG GGTTCTGGACAAAGAAAGCTTGTACCTTAAAACAGGAGGATACAAGAAGCTEST: gi|211407818|gb|FL480458.1|FL480458
genomic: TAAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... ttttttctagGGTTCTGGACAAAGAAAGCTTGTACCTTAAAACAGGAGGATACAAGAAGCT
EST: TAAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG GGTTYTGGACAAAGAAAGCTTGTACCTTAAAACAGGAGGATACAAGAAGCT
genomic: TAAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... ttttttctagGGTTCTGGACAAAGAAAGCTTGTACCTTAAAACAGGAGGATACAAGAAGCT
tatttttatttgcaaatgtagcaacaatatactaatttgatgtacttttttctagGGTTCTGGACAAAGAAAGCTTGTACCTTAAAACAGGAGGATACAAGAAGCTGGAGTGGTTGTCTGAAGGCTTTTGAACTGCTTGAAGCATTAGTGTAGCT
tacttttttct CT-rich tract
aacaatatactaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggctgcaacaccgtctagtggaggtagataaggcatcaaaattgtatttttatttgcaaatgtagcaacaatatactaatttgatgtacttttttctagGGTTCTGGACAAAGAAAGCTTGTACCTTAAAACAGGAGGATACAAGAAGCTGGAGTGGTTGTCTGAAGGCTTTTGAACTGCTTGAAGCATTAGTGTAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- gctgcaa
- - - - - - - - - - - - - - - - - catcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgatg