1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagaaacacgtttgatcttctaattcaaaattagagggaagaacacgatatatctgatttctgatctgcaccatttcttgctattttgtccagtgcagGCTTGAGAGGGTGTGGGATCCTGTACTTGTCGCTGGAGCTAAAAAGAGGATAAGCTATTACTTCTTAAAAGAG
species | Zea mays |
transcript | GRMZM2G075488_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGATTATCAGGTCTAGGTTTTGGTGGTGGATTTGAAAGGCTGCATTATCT GCTTGAAAGGGTGTGGGATCCTGTACTTGTCGCTGGAGCEST: gi|60358578|gb|DN225551.1|DN225551
genomic: GGATTATCAGGTCTAGGTTTTGGTGGTGGATTTGAAAGGCTGCATTATCTgtaagaaaca ... tccagtgcagGCTTGAGAGGGTGTGGGATCCTGTACTTGTCGCTGGAGC
EST: GGATTATCAGGTCTAGGTTTTGGTGGTGGATTTGAAAGGCTGCATTATCT GCTTGAGAGGGTGTGGGATCCTGTACTTGTCGCTGGAGCTAAAAAGAGGATEST: gi|211492404|gb|FL232704.1|FL232704
genomic: GGATTATCAGGTCTAGGTTTTGGTGGTGGATTTGAAAGGCTGCATTATCTgtaagaaaca ... tccagtgcagGCTTGAGAGGGTGTGGGATCCTGTACTTGTCGCTGGAGCTAAAAAGAGGAT
EST: GGATTATCAGGTCTAGGTTTTGGTGGTGGATTTGAAAGGCTGCATTATCT GCTTGAGAGGGTGTGGGATCCTGTACTTGTCGCTGGAGCTAAAAAGAGGATEST: gi|67011936|gb|CO440685.1|CO440685
genomic: GGATTATCAGGTCTAGGTTTTGGTGGTGGATTTGAAAGGCTGCATTATCTgtaagaaaca ... tccagtgcagGCTTGAGAGGGTGTGGGATCCTGTACTTGTCGCTGGAGCTAAAAAGAGGAT
EST: GGATTATCAGGTCTAGGTTTTGGTGGTGGATTTGAAAGGCTGCATTATCT GCTTGAGAGGGTGTGGGATCCTGTACTTGTCGCTGGAGCTAAAAAGAGGATEST: gi|78090093|gb|DV518467.1|DV518467
genomic: GGATTATCAGGTCTAGGTTTTGGTGGTGGATTTGAAAGGCTGCATTATCTgtaagaaaca ... tccagtgcagGCTTGAGAGGGTGTGGGATCCTGTACTTGTCGCTGGAGCTAAAAAGAGGAT
EST: GGATTATCAGGTCTAGGTTTTGGTGGTGGATTTGAAAGGCTGCATTATCT GCTTGAGAGGGTGTGGGATCCTGTACTTGTCGCTGGEST: gi|148995979|gb|EE035228.2|EE035228
genomic: GGATTATCAGGTCTAGGTTTTGGTGGTGGATTTGAAAGGCTGCATTATCTgtaagaaaca ... tccagtgcagGCTTGAGAGGGTGTGGGATCCTGTACTTGTCGCTGG
EST: GGATTATCAGGGCTAGGTTTTGGTGGTGGATTTGAAAGGCTGCATTATCT GCTTGAGAGGGTGTGGGATCCTGTACTTGTCGCTGGAGCTAAA
genomic: GGATTATCAGGTCTAGGTTTTGGTGGTGGATTTGAAAGGCTGCATTATCTgtaagaaaca ... tccagtgcagGCTTGAGAGGGTGTGGGATCCTGTACTTGTCGCTGGAGCTAAA
cacgatatatctgatttctgatctgcaccatttcttgctattttgtccagtgcagGCTTGAGAGGGTGTGGGATCCTGTACTTGTCGCTGGAGCTAAAAAGAGGATAAGCTATTACTTCTTAAAAGAG
ttctgat putative branch site (score: 3)
ttttgtcc putative PPT
tattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaaacacgtttgatcttctaattcaaaattagagggaagaacacgatatatctgatttctgatctgcaccatttcttgctattttgtccagtgcagGCTTGAGAGGGTGTGGGATCCTGTACTTGTCGCTGGAGCTAAAAAGAGGATAAGCTATTACTTCTTAAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT