1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...caatatctagagttgaaatgcagtgagagcactttgtaagttttgctatataccaatgtttatcatgcttcacttagtacgtggtgctgtttgtgtctagATGACTGTCATTAGGCCTGCTGACATGGATGCTCTCCAAAATGCGTTGGACAACAATAAT
species | Zea mays |
transcript | GRMZM2G075153_T04 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCAAGACAAGGATTTACATGGAA--TGAGCTCCCTAAGAGGG-AATTTCG ATGACTGTCATTAGGCCTGCTGACATGGATGCT
genomic: GCAAGACAAGGATTTACATGGAAAATGAGCTCCCTAAGAGGGGAATTTCGgtaatactgt ... ttgtgtctagATGACTGTCATTAGGCCTGCTGACATGGATGCT
ctatataccaatgtttatcatgcttcacttagtacgtggtgctgtttgtgtctagATGACTGTCATTAGGCCTGCTGACATGGATGCTCTCCAAAATGCGTTGGACAACAATAAT
aatgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatatctagagttgaaatgcagtgagagcactttgtaagttttgctatataccaatgtttatcatgcttcacttagtacgtggtgctgtttgtgtctagATGACTGTCATTAGGCCTGCTGACATGGATGCTCTCCAAAATGCGTTGGACAACAATAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - -aaatgca
- - - - - - - - - - - - - - - - - - - - ttttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgctg