1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atgctctaattttttgtgtgtatatgatattgtttgttgctcttcccttagtagtcagtatcatgctattttaagttaacttcgtagttgcttgtgacagTATGATTATAATCCAAATGAAGACTATGCGGAGACAGAGTTGAAGTTGAGGGAATACTTGCAATCATTTTTGGAAACGGTTAAATCCTTCAACACAATAT
species | Zea mays |
transcript | GRMZM2G075101_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCAAAAAGATGTCTAATCTGCAGCAAATGGTTCAGGAGTTAGCATCGAAG TATGATTATAATCCAAATGAAGACTATGCGGAGACAGAGTTGAAGTTGAGGEST: gi|37398489|gb|CF636559.1|CF636559
genomic: CCAAAAAGATGTCTAATCTGCAGCAAATGGTTCAGGAGTTAGCATCGAAGgtataataga ... cttgtgacagTATGATTATAATCCAAATGAAGACTATGCGGAGACAGAGTTGAAGTTGAGG
EST: GGAGTTAGCATCGAAG TATGATTATAATCCAAATGAAGACTATGCGGAGACAGAGTTGAAGTTGAGGEST: gi|74246322|gb|DT654236.1|DT654236
genomic: GGAGTTAGCATCGAAGgtataataga ... cttgtgacagTATGATTATAATCCAAATGAAGACTATGCGGAGACAGAGTTGAAGTTGAGG
EST: CCAAAAAGATGTCTAATCTGCAGCAAATGGTTCAGGAGTTAGCATCGAAG TATGATTATAATCCAAATGAAGACTATGCGGAGACAGAGTTGAAGTTGAGGEST: gi|71761514|gb|DR959451.1|DR959451
genomic: CCAAAAAGATGTCTAATCTGCAGCAAATGGTTCAGGAGTTAGCATCGAAGgtataataga ... cttgtgacagTATGATTATAATCCAAATGAAGACTATGCGGAGACAGAGTTGAAGTTGAGG
EST: CCAAAAAGATGTCTAATCTGCAGCAAATGGTTCAGGAGTTAGCATCGAAG TATGATTATAATCCAAATGAAGACTATGCGGAGACAGAGTTGAAGTTGAGGEST: gi|6601609|gb|AW256155.1|AW256155
genomic: CCAAAAAGATGTCTAATCTGCAGCAAATGGTTCAGGAGTTAGCATCGAAGgtataataga ... cttgtgacagTATGATTATAATCCAAATGAAGACTATGCGGAGACAGAGTTGAAGTTGAGG
EST: CCAAAAAGATGTCTAATCTGCAGCAAATGGTTCAGGAGTTAGCATCGAAG TATGATTATAATCCAAATGAAGACTATGCGGAGACAGAGTTGAAGTTGAGGEST: gi|71773508|gb|DR971408.1|DR971408
genomic: CCAAAAAGATGTCTAATCTGCAGCAAATGGTTCAGGAGTTAGCATCGAAGgtataataga ... cttgtgacagTATGATTATAATCCAAATGAAGACTATGCGGAGACAGAGTTGAAGTTGAGG
EST: CCAAAAAGATGTCTAATCTGCAGCAAATGGTTCAGGAGTTAGCATCGAAG TATGATTATAATCCAAATGAAGACTATGCGGAGACAGAGTTGAAGTTGAGGEST: gi|76020456|gb|DT947626.1|DT947626
genomic: CCAAAAAGATGTCTAATCTGCAGCAAATGGTTCAGGAGTTAGCATCGAAGgtataataga ... cttgtgacagTATGATTATAATCCAAATGAAGACTATGCGGAGACAGAGTTGAAGTTGAGG
EST: CCAAAAAGATGTCTAATCTGCAGCAAATGGTTCAGGAGTTAGCATCGAAG TATGATTATAATCCAAATGAAGACTATGCGGAGACAGAGTTGAAGTTGAGGEST: gi|37388177|gb|CF631295.1|CF631295
genomic: CCAAAAAGATGTCTAATCTGCAGCAAATGGTTCAGGAGTTAGCATCGAAGgtataataga ... cttgtgacagTATGATTATAATCCAAATGAAGACTATGCGGAGACAGAGTTGAAGTTGAGG
EST: CCAAAAAGATGTCTAATCTGCAGCAAATGGTTCAGGAGTTAGCATCGAAG TATGATTATAATCCAAATGAAGACTATGCGGAGACAGAGTTGAAGTTGAGGEST: gi|31364678|gb|CD449033.1|CD449033
genomic: CCAAAAAGATGTCTAATCTGCAGCAAATGGTTCAGGAGTTAGCATCGAAGgtataataga ... cttgtgacagTATGATTATAATCCAAATGAAGACTATGCGGAGACAGAGTTGAAGTTGAGG
EST: CCAAAAAGATGTCTAATCTGCAGCAAATGGTTCAGGAGTTAGCATCGAAG TATGATTATAATCCAAATGAAGACTATGCGGAGACAGAGTTGAAGTTGAGGEST: gi|89250411|gb|DY622197.1|DY622197
genomic: CCAAAAAGATGTCTAATCTGCAGCAAATGGTTCAGGAGTTAGCATCGAAGgtataataga ... cttgtgacagTATGATTATAATCCAAATGAAGACTATGCGGAGACAGAGTTGAAGTTGAGG
EST: CCAAAAAGATGTCTAATCTGCAGCAAATGGTTCAGGAGTTAGCATCGAAG TATGATTATAATCCAAATGAAGACTATGCGGAGACAGAGTTGAAGTTGAGG
genomic: CCAAAAAGATGTCTAATCTGCAGCAAATGGTTCAGGAGTTAGCATCGAAGgtataataga ... cttgtgacagTATGATTATAATCCAAATGAAGACTATGCGGAGACAGAGTTGAAGTTGAGG
ccttagtagtcagtatcatgctattttaagttaacttcgtagttgcttgtgacagTATGATTATAATCCAAATGAAGACTATGCGGAGACAGAGTTGAAGTTGAGGGAATACTTGCAATCATTTTTGGAAACGGTTAAATCCTTCAACACAATAT
agttaac putative branch site (score: 3)
tattttaagttaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgctctaattttttgtgtgtatatgatattgtttgttgctcttcccttagtagtcagtatcatgctattttaagttaacttcgtagttgcttgtgacagTATGATTATAATCCAAATGAAGACTATGCGGAGACAGAGTTGAAGTTGAGGGAATACTTGCAATCATTTTTGGAAACGGTTAAATCCTTCAACACAATAT
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