1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgctgttccaatgagattaattcattaaatgatcaatacaagtagatgttttgttctttactgccagaaactaactcaggatcttgctgttatcatgcagATTCTTGAGGTGCCTAGTCTCCTAGAGGAAGGGTCTTCTTCGGTTGTCAAGAGGAACATCCTGAAACAGAAGCAGGAAAGTGATGCAAAGAACGGTAGTG
species | Zea mays |
transcript | GRMZM2G075051_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAAAACACGAGAAAACGTTGAGAAATGTTTTGAGGAACTTGCATTGAAG ATTCTTGAGGTGCCTAGTCTCCTAGAGGAAGGGTCTTCTTCGGTTGTCAAGEST: gi|101387421|gb|EB815726.1|EB815726
genomic: CAAAAACACGAGAAAACGTTGAGAAATGTTTTGAGGAACTTGCATTGAAGgtatgtttgg ... tatcatgcagATTCTTGAGGTGCCTAGTCTCCTAGAGGAAGGGTCTTCTTCGGTTGTCAAG
EST: CAAAAACACGAGAAAACGTTGAGAAATGTTTTGAGGAACTTGCATTGAAG ATTCTTGAGGTGCCTAGTCTCCTAGAGGAAGGGTCTTCTTCGGTTGTCAAGEST: gi|5005772|gb|AI711834.1|AI711834
genomic: CAAAAACACGAGAAAACGTTGAGAAATGTTTTGAGGAACTTGCATTGAAGgtatgtttgg ... tatcatgcagATTCTTGAGGTGCCTAGTCTCCTAGAGGAAGGGTCTTCTTCGGTTGTCAAG
EST: CAAAAACCCGAGAAAACGTTGAGAAATGTTTTGAGGAACTTGCATTGAAG ATTCTTGAGGTGCCTAGTCTCCTAGAGGAAGGGTCTTCTTCGGTTGTCAAGEST: gi|47962623|gb|CN845332.1|CN845332
genomic: CAAAAACACGAGAAAACGTTGAGAAATGTTTTGAGGAACTTGCATTGAAGgtatgtttgg ... tatcatgcagATTCTTGAGGTGCCTAGTCTCCTAGAGGAAGGGTCTTCTTCGGTTGTCAAG
EST: CAAAAACACGAGAAAACGTTGAGAAATGTTTTGAGGAACTTGCATTGAAG ATTCTTGAGGTGCCTAGTCTCCTAGAGGAAGGGTCTTCTTCGGTTGTCAAGEST: gi|78106734|gb|DV525152.1|DV525152
genomic: CAAAAACACGAGAAAACGTTGAGAAATGTTTTGAGGAACTTGCATTGAAGgtatgtttgg ... tatcatgcagATTCTTGAGGTGCCTAGTCTCCTAGAGGAAGGGTCTTCTTCGGTTGTCAAG
EST: CAAAAACACGAGAAAACGTTGAGAAATGTTTTGAGGAACTTGCATTGAAG ATTCTTGAGGTGCCTAGTCTCCTAGAGGAAGGGTCTTCTTCGGTTGTCAAGEST: gi|101387258|gb|EB815646.1|EB815646
genomic: CAAAAACACGAGAAAACGTTGAGAAATGTTTTGAGGAACTTGCATTGAAGgtatgtttgg ... tatcatgcagATTCTTGAGGTGCCTAGTCTCCTAGAGGAAGGGTCTTCTTCGGTTGTCAAG
EST: CAAAAACACGAGAAAACGTTGAGAAATGTTTTGAGGAACTTGCATTGAAG ATTCTTGAGGTGCCTAGTCTCCTAGAGGAAGGGTCTTCTTCGGTTGTCAAGEST: gi|211236984|gb|FL432200.1|FL432200
genomic: CAAAAACACGAGAAAACGTTGAGAAATGTTTTGAGGAACTTGCATTGAAGgtatgtttgg ... tatcatgcagATTCTTGAGGTGCCTAGTCTCCTAGAGGAAGGGTCTTCTTCGGTTGTCAAG
EST: CAAAAACACGAGAAAACGTTGAGAAATGTTTTGAGGAACTTGCATTGAAG ATTCTTGAGGTGCCTAGTCTCCTAGAGGAAGGGTCTTCTTCGGTTGTCAAG
genomic: CAAAAACACGAGAAAACGTTGAGAAATGTTTTGAGGAACTTGCATTGAAGgtatgtttgg ... tatcatgcagATTCTTGAGGTGCCTAGTCTCCTAGAGGAAGGGTCTTCTTCGGTTGTCAAG
atgttttgttctttactgccagaaactaactcaggatcttgctgttatcatgcagATTCTTGAGGTGCCTAGTCTCCTAGAGGAAGGGTCTTCTTCGGTTGTCAAGAGGAACATCCTGAAACAGAAGCAGGAAAGTGATGCAAAGAACGGTAGTG
aactaac putative branch site (score: 33)
ttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctgttccaatgagattaattcattaaatgatcaatacaagtagatgttttgttctttactgccagaaactaactcaggatcttgctgttatcatgcagATTCTTGAGGTGCCTAGTCTCCTAGAGGAAGGGTCTTCTTCGGTTGTCAAGAGGAACATCCTGAAACAGAAGCAGGAAAGTGATGCAAAGAACGGTAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
tgctgtt
- - - - - - - - - - - - - - - - - aatacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgctg