1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaggtgccccgcctacctttctttcttgctcttactttgaacttggtatataatttagcgaacgattgatgtcgtagGTGACAAGTCTACAGCTTCCGAGCTGTTGGATGATCACCTGAGGACGATTCTAGAGAATGTTCGCTTGCTGTATCTTCTGGAGAGAGAAGGTTGGGATGC
species | Zea mays |
transcript | GRMZM2G074241_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCCTCTCTCTCACGAGGAGGCAAAGTTGAAGATGCTCTCAGGCGAAACAA GTGACAAGTCTACAGCTTCCGAGCTGTTGGATGATCACCTGAGGACGATTCEST: gi|71768207|gb|DR966144.1|DR966144
genomic: CCCTCTCTCTCACGAGGAGGCAAAGTTGAAGATGCTCTCAGGCGAAACAAgtaggtgccc ... gatgtcgtagGTGACAAGTCTACAGCTTCCGAGCTGTTGGATGATCACCTGAGGACGATTC
EST: CCCTCTCTCTCACGAGGAGGCAAAGTTGAAGATGCTCTCAGGCGAAACAA GTGACAAGTCTACAGCTTCCGAGCTGTTGGATGATCACCTGAGGACGATTC
genomic: CCCTCTCTCTCACGAGGAGGCAAAGTTGAAGATGCTCTCAGGCGAAACAAgtaggtgccc ... gatgtcgtagGTGACAAGTCTACAGCTTCCGAGCTGTTGGATGATCACCTGAGGACGATTC
ttcttgctcttactttgaacttggtatataatttagcgaacgattgatgtcgtagGTGACAAGTCTACAGCTTCCGAGCTGTTGGATGATCACCTGAGGACGATTCTAGAGAATGTTCGCTTGCTGTATCTTCTGGAGAGAGAAGGTTGGGATGC
ttggtatataattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtgccccgcctacctttctttcttgctcttactttgaacttggtatataatttagcgaacgattgatgtcgtagGTGACAAGTCTACAGCTTCCGAGCTGTTGGATGATCACCTGAGGACGATTCTAGAGAATGTTCGCTTGCTGTATCTTCTGGAGAGAGAAGGTTGGGATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA