Sequence
atgc intronic sequence ATGC exonic sequence...aattcagctgctctgtatcttcatatttagccataaattcctactgttaaatatttttccaggttgtccagttcatatattttattttattatgtaccagGAATTGCTGATAGCTTCTCGGAATCTGGAGTTTTTCACCAATGGTTATCGATATTTAATTCAGATTCTGCCAGCTGCAGTTGTTGCTCCAATGTACTTCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G074103_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g11946.2 (Oryza sativa), 3'ss of exon 5
aattcagctgctctgtatcttcatatttagccataaattcctactgt-taaat-atttttccaggttgtccagttcatat-attttattttattatgtac-cagGAATTGCTGATAGCTTCTCGGAATCTGGAGTTTTTCACCAATGGTTATCGATATTTAATTCAGATTCTGCCAGCTGCAGTTGTTGCTCCAATGTACTTCT
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----cagctccatgttttttgaatgttcagatggaaacttatgatgtgtgagtcatttttctaagcaggccgatttatattatcttttcctgttctgtttgcagGAATTGCTAATAGCATCTCGTAATCTGGAGTTTTTCACCAATGGCTACCGTTATTTAATCCAGATCCTGCCAGCTGCAGTTGTTGCTCCGATGTACTTCT
upper sequence: GRMZM2G074103_T02 (Zea mays), 3'ss of exon 5
lower sequence: AT1G54350.1 (Arabidopsis thaliana), 3'ss of exon 4
aattcagctgctctgtatcttcatatttagccataaattcctactgttaaatatttttccaggttgtccagttcat-atattttattttattatgtaccagGAATTGCTGATAGCTTCTCGGAATCTGGAGTTTTTCACCAATGGTTATCGATATTTAATTCAGATTCTGCCAGCTGCAGTTGTTGCTCCAATGTACTTCT
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--------------gtaaaat--ttctcgagctttcttatccatttatatatatatctatagattgcacaataaattacattcaattttttcacctgc-agGAATTGCTGATAGCATCTAGAAACCTAGAATTCTTCACCGATGGATATCGCTACCTCATTCAGATTCTTCCAGTTGCTGTTGTTGCCCCAATGTATTTCT
upper sequence: GRMZM2G074103_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv19s0085g01190.t01 (Vitis vinifera), 3'ss of exon 5
aattcagctgctctgtatcttcatattta--gccataaa-ttcctactgttaaatatttttccaggtt-gtccagttcatatatttt--attttattatgtaccagGAATTGCTGATAGCTTCTCGGAATCTGGAGTTTTTCACCAATGGTTATCGATATTTAATTCAGATTCTGCCAGCTGCAGTTGTTGCTCCAATGTACTTCT
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------actggacacattttctgggtccaatgtcacaaggcttctatctcaacatacctttatatctttatatgatccatctgacttcaaattttctattttgcagCAATTGTTGATTTCTTCTAGAAATCTAGAATTCTTTACCAGTGGCTACCGCTACCTTATTCAGATTCTTCCAGCTGCAGTTGTTGCTCCGATGTATTTCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttaaatatttttccaggttgtccagttcatatattttattttattatgtaccagGAATTGCTGATAGCTTCTCGGAATCTGGAGTTTTTCACCAATGGTTATCGATATTTAATTCAGATTCTGCCAGCTGCAGTTGTTGCTCCAATGTACTTCT
ttttatt CT-rich tract
agttcatatattttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aattcagctgctctgtatcttcatatttagccataaattcctactgttaaatatttttccaggttgtccagttcatatattttattttattatgtaccagGAATTGCTGATAGCTTCTCGGAATCTGGAGTTTTTCACCAATGGTTATCGATATTTAATTCAGATTCTGCCAGCTGCAGTTGTTGCTCCAATGTACTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG