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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agaatagtgcaaagtgaaagagtgggtcttttttctgtgcaaatgtcgttgttatatttgacttctagctaacctgatgtttatcatatacctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTCAACCCATCTGATCTGTCTTTTGTGTTTGATGGTGAGAAGATTAATCCAT

Basic information

species Zea mays
transcript GRMZM2G073404_T01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211370522|gb|FL006750.1|FL006750
EST:     TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG                         GACGAAAAGTTCGACAAGCTTCTCAAGGKGTACGCCAAGAAGGCAAAGCTC
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
EST: gi|61118633|gb|DN559594.1|DN559594
EST:     TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG                         GACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
EST: gi|113701973|gb|EE679477.1|EE679477
EST:     TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG                         GACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
EST: gi|16377833|gb|BI992136.1|BI992136
EST:     TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG                         GACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
EST: gi|6993971|gb|AW453185.1|AW453185
EST:     TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG                         GACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
EST: gi|67015419|gb|CO444168.1|CO444168
EST:     TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG                         GACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
EST: gi|16920129|gb|BM074514.1|BM074514
EST:     TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG                         GACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
EST: gi|16919201|gb|BM074084.1|BM074084
EST:     TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG                         GACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
EST: gi|20507610|gb|BQ279703.1|BQ279703
EST:     TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG                         GACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
EST: gi|67013821|gb|CO442570.1|CO442570
EST:     TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG                         GACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
EST: gi|67014283|gb|CO443032.1|CO443032
EST:     TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG                         GACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
EST: gi|50322317|gb|CO517443.1|CO517443
EST:     TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG                         GACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
EST: gi|211154210|gb|FL453080.1|FL453080
EST:     TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG                         GACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
EST: gi|8577459|gb|BE130096.1|BE130096
EST:     TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG                         GACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
EST: gi|16925180|gb|BM078248.1|BM078248
EST:     TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAG                         GACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC
genomic: TCATATCAATCCAGGACAAGGATGGGCAGCAACAGATGCGTGTATACAAGgttattataa ... cctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgttgttatatttgacttctagctaacctgatgtttatcatatacctgttacagGACGAAAAGTTCGACAAGCTTCTCAAGGTGTACGCCAAGAAGGCAAAGCTCAACCCATCTGATCTGTCTTTTGTGTTTGATGGTGAGAAGATTAATCCAT
                               atgtttatcatata  TA-rich tract