Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctttggccatctcattttttcaatatacctgtatgaaaaccttttagcagtaacttgtcatttagttactgtaaaacaggtagagtttttttttataggagaaaaccattcttctgttttatgagcaattaattattagtttatcacgaaatcttcatagaaccaagttaacacaacgctcctacccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCAGATGATGGTATGGCTCGCTTCTACCTAGTGGTTTTTGCCAAATTGATCG

Basic information

species Zea mays
transcript GRMZM2G070360_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G070360_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g46980.1 (Oryza sativa), 3'ss of exon 5
gtacctttggccatctcattttttcaatatacctgtatgaaaaccttttagcagtaacttgtcatttagttactgtaaaacaggtagagtttttttttataggagaaaaccattcttctgttttatgagcaattaattattagtttatcacgaaatcttcatagaaccaagttaacacaacgctcctacccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCA---ATCCGCAGATGATGGTATGGCTCGCTTCTACCTAGTGGTTTTTGCCAAATTGATCG-
                                                                                          | || ||| |   |   ||| ||    ||| |     | ||    ||    ||   ||    | | |||||||    ||   |    |      | |  |||||||||||||||||||||||||||| |||    | || ||||     ||   |    ||| ||  ||||| ||| ||||| |  || |  |   |||    | || |  
------------------------------------------------------------------------------------------tcttatttgtca-atttaacaatgaccctgataggcta-cagcacatgcagagcaaatggttataccttcatattttcattcttcttc-----ccgtttccttgcagATCCGGAAGCTTCTTTTTGGTCAGGTGACGGCATAATCTGTGCATGTAATTTCAGCTG-CGGTATAGCT-GCTTCCATGTAAT--TAGCTGCAGGTTCGAACCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60343804|gb|DN210777.1|DN210777
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|86473168|gb|DY239538.1|DY239538
EST:     TACAACTTGACCCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
genomic: TAC-ACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|60398792|gb|DN231608.1|DN231608
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|78090480|gb|DV518854.1|DV518854
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|93017021|gb|EB642541.1|EB642541
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTTCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTTGGC-AGACTGCAGCTTAATTGACTCAATCCGC
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTT-GGCCAGACTGCAGCTTAATTGACTCAATCCGC
EST: gi|12968344|gb|BG265290.1|BG265290
EST:     ACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGACACAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGGCTGCAGCCTAATTGACTCAATCCGC
genomic: ACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTG-C-CAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGC
EST: gi|33101863|gb|CF061823.1|CF061823
EST:     ACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCGGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATTGACTCAATCCGCA
genomic: ACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|76291539|gb|DV031107.1|DV031107
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|6227149|gb|AW155678.1|AW155678
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|6102086|gb|AW126556.1|AW126556
EST:     TCGCACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATTGACTCAATCCGCA
genomic: TA-CACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|5871047|gb|AW017623.1|AW017623
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|74244979|gb|DT652893.1|DT652893
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|5917377|gb|AW054168.1|AW054168
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|60338784|gb|DN205757.1|DN205757
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|5871032|gb|AW017608.1|AW017608
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|78021201|gb|DV489588.1|DV489588
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|5871144|gb|AW017585.1|AW017585
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|6020701|gb|AW065509.1|AW065509
EST:     GTACACTTGACGCCAGACTGGAAGTTGNTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|93017020|gb|EB642540.1|EB642540
EST:     GTACACTTGCCCCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|78021681|gb|DV490068.1|DV490068
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|5739755|gb|AI947331.1|AI947331
EST:     GACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATTGACTCAATCCGCA
genomic: GACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|60353247|gb|DN220220.1|DN220220
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|78022447|gb|DV490834.1|DV490834
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|211532713|gb|FL481428.1|FL481428
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|5597260|gb|AI891253.1|AI891253
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|32866481|gb|CF006163.1|CF006163
EST:     GTACACTTGACGCCAGGCTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATTGACTCA-TCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|93017438|gb|EB642958.1|EB642958
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|37424388|gb|CF649926.1|CF649926
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|4967015|gb|AI691793.1|AI691793
EST:     GTACCCTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|94474763|gb|EB703721.1|EB703721
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|6227120|gb|AW155649.1|AW155649
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGC
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGC
EST: gi|5455944|gb|AI833634.1|AI833634
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|74235297|gb|DT643211.1|DT643211
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTNCA-TCCGC
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACT-CAATCCGC
EST: gi|60353442|gb|DN220415.1|DN220415
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|9254374|gb|BE344842.1|BE344842
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|93282317|gb|EB674581.1|EB674581
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|71331382|gb|DR802528.1|DR802528
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTNCA-TCCGC
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACT-CAATCCGC
EST: gi|211513370|gb|FL031772.1|FL031772
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|149095115|gb|EE180726.2|EE180726
EST:     GTACACTTGACGCCAGACTGGGAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|5871489|gb|AW017960.1|AW017960
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|60354680|gb|DN221653.1|DN221653
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|32917048|gb|CF021860.1|CF021860
EST:     GTACACTTGACGCCAGGCTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATTGACTC-ATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|71440305|gb|DR821355.1|DR821355
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|94478080|gb|EB707038.1|EB707038
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|60358982|gb|DN225955.1|DN225955
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACT
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACT
EST: gi|6828162|gb|AW331805.1|AW331805
EST:     GTACCCTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|60355195|gb|DN222168.1|DN222168
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|74244980|gb|DT652894.1|DT652894
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|5739691|gb|AI947267.1|AI947267
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|67017910|gb|CO446659.1|CO446659
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCGGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCCTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
EST: gi|149077234|gb|EE165904.2|EE165904
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTG
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTG
EST: gi|60349876|gb|DN216849.1|DN216849
EST:     GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAG                         ATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA
genomic: GTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 660

CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCAGATGATGGTATGGCTCGCTTCTACCTAGTGGTTTTTGCCAAATTGATCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1399

CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCAGATGATGGTATGGCTCGCTTCTACCTAGTGGTTTTTGCCAAATTGATCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 842

CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCAGATGATGGTATGGCTCGCTTCTACCTAGTGGTTTTTGCCAAATTGATCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1030

CTCTGGAGGTATTGTCTTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCCAGACTGGAAGTTGTTTTCCGCAAGAAATTGCCAGAGgtacctttgg ... acccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCAGATGATGGTATGGCTCGCTTCTACCTAGTGGTTTTTGCCAAATTGATCG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttatcacgaaatcttcatagaaccaagttaacacaacgctcctacccttgcagATCCGGAAGCTTCTTTTTGGCCAGACTGCAGCTTAATTGACTCAATCCGCAGATGATGGTATGGCTCGCTTCTACCTAGTGGTTTTTGCCAAATTGATCG
                           agttaac  putative branch site (score: 1030)
                                        ctcctaccctt  putative PPT
          aaatctt  TA-rich tract