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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaaacaagcgaaaatacaatgctttcttcctggagagctttgtagaatacatatatctcacatttctgtgtgctgttatgcagAGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGCCTGATTCTTCTCTGTGTGAGGACTTGGTTCTTGGTTTGGCTGTGGGGAA

Basic information

species Zea mays
transcript GRMZM2G070239_T02
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71430460|gb|DR811510.1|DR811510
EST:     CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGG                         AGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
genomic: CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGGgtatgcaaac ... tgttatgcagAGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
EST: gi|211007022|gb|FK984004.1|FK984004
EST:     CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGG                         AGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
genomic: CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGGgtatgcaaac ... tgttatgcagAGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
EST: gi|67041575|gb|CO467830.1|CO467830
EST:     CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGG                         AGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAAGCC-GTG
genomic: CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGGgtatgcaaac ... tgttatgcagAGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAA-GCCCGTG
EST: gi|37396713|gb|CF635650.1|CF635650
EST:     CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGG                         AGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
genomic: CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGGgtatgcaaac ... tgttatgcagAGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
EST: gi|60340914|gb|DN207887.1|DN207887
EST:     CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGG                         AGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
genomic: CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGGgtatgcaaac ... tgttatgcagAGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
EST: gi|78179171|gb|DV549544.1|DV549544
EST:     CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGG                         AGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
genomic: CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGGgtatgcaaac ... tgttatgcagAGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
EST: gi|71430461|gb|DR811511.1|DR811511
EST:     CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGG                         AGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
genomic: CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGGgtatgcaaac ... tgttatgcagAGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
EST: gi|18178719|gb|BM379929.1|BM379929
EST:     CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGG                         AGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
genomic: CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGGgtatgcaaac ... tgttatgcagAGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
EST: gi|31356601|gb|CD440958.1|CD440958
EST:     CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGG                         AGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
genomic: CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGGgtatgcaaac ... tgttatgcagAGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
EST: gi|166669970|gb|EG172180.1|EG172180
EST:     CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGG                         AGTAATGATGGCAGATAC
genomic: CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGGgtatgcaaac ... tgttatgcagAGTAATGATGGCAGATAC
EST: gi|211224371|gb|FL431883.1|FL431883
EST:     CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGG                         AGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
genomic: CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGGgtatgcaaac ... tgttatgcagAGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
EST: gi|148983454|gb|EE029469.2|EE029469
EST:     CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGG                         AGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
genomic: CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGGgtatgcaaac ... tgttatgcagAGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
EST: gi|76012688|gb|DT939858.1|DT939858
EST:     CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGG                         AGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
genomic: CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGGgtatgcaaac ... tgttatgcagAGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
EST: gi|50326513|gb|CO521639.1|CO521639
EST:     CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGG                         AGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
genomic: CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGGgtatgcaaac ... tgttatgcagAGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
EST: gi|60337673|gb|DN204646.1|DN204646
EST:     CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGG                         AGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
genomic: CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGGgtatgcaaac ... tgttatgcagAGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
EST: gi|211018139|gb|FK984065.1|FK984065
EST:     CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGG                         AGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
genomic: CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGGgtatgcaaac ... tgttatgcagAGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
EST: gi|4776273|gb|AI665276.1|AI665276
EST:     CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGG                         AGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
genomic: CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGGgtatgcaaac ... tgttatgcagAGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
EST: gi|22819737|gb|BU499827.1|BU499827
EST:     CAGGTCGCCCTAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGG                         AGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
genomic: CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGGgtatgcaaac ... tgttatgcagAGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
EST: gi|33098007|gb|CF057967.1|CF057967
EST:     CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGG                         AGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
genomic: CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGGgtatgcaaac ... tgttatgcagAGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
EST: gi|30705843|gb|CD058940.1|CD058940
EST:     CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGG                         AGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
genomic: CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGGgtatgcaaac ... tgttatgcagAGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
EST: gi|32928031|gb|CF032843.1|CF032843
EST:     CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGGTAACGG                         AGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
genomic: CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGGgtatgcaaac ... tgttatgcagAGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
EST: gi|6918354|gb|AW399884.1|AW399884
EST:     CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTTGTTAACGG                         AGTAATGATGGCAGA
genomic: CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGGgtatgcaaac ... tgttatgcagAGTAATGATGGCAGA
EST: gi|149061145|gb|EE157405.2|EE157405
EST:     CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGG                         AGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC
genomic: CAGGTCGCCATAGTACAACTGTGACAAATATGCATCTCCCTCGTTAACGGgtatgcaaac ... tgttatgcagAGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctggagagctttgtagaatacatatatctcacatttctgtgtgctgttatgcagAGTAATGATGGCAGATACTGGTGTAGCAGGAGCTTGGCCTGAAGCCCGTGCCTGATTCTTCTCTGTGTGAGGACTTGGTTCTTGGTTTGGCTGTGGGGAA
                          atctcac  putative branch site (score: 3)
              tagaatacatatat  TA-rich tract