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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actgcaatatatatatatatatatatatatatatatatatatatatatatatatatatacacacacacacacaaagtgacatgctgtttatggttctcagGTTATATAGGCTCAGTTTCCTTTTTAGATACTGTGCTACAAGTTGTTGAGAAATTGCGATCAGTTAATCCTGATCTTGTATATG

Basic information

species Zea mays
transcript GRMZM2G069758_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069758_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os12g40830.3 (Oryza sativa), 3'ss of exon 4
----------------------------------------------------------------------------------actgcaatatatatatatatatatatatatatatatatatatatatatatatatatatacacacacacacacaaagtgacatgctgtttatggttctcagGTTATATAGGCTCAGTTTCCTTTTTAGATACTGTGCTACAAGTTGTTGAGAAATTGCGATCAGTTAATCCTGATCTTGTATATG
                                                                                  |   ||||    ||  |||    |           | | ||     | ||| |  | |          ||| ||||| ||||| ||||||||||  ||||||||||| || || ||||||||||||  |||||| |||||||||||||| ||||| |||||||| |||||||||||||||||||
gtgaatgacttcttcttcattttacactttcccatcctttgtcaaagaaaaaaaaagctctcctgtttctggtgatgttttcatcacaatg-gcatgcataccggttagccatctcctttgtactgccaaata-aggtttgtgtgttttaacaaaaagtaacatgatgtttatggtattcagGTTATATTGGATCTGTTTCCTTTTTAACTACTGTACTACAAGTTGTTGACAAATTACGATCAGTCAATCCTGATCTTGTATATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211278750|gb|FL388232.1|FL388232
EST:     TGAAGGACTGGAGGAAAATCAGTTGCTTCATTATACCCATTTATTAACAG                         GTTATATAGGCTCAGTTTCCTTTTTAGATACTGTGCTACAAGTTGTTGAGA
genomic: TGAAGGACTGGAGGAAAATCAGTTGCTTCATTATACCCATTTATTAACAGgtgaaactag ... tggttctcagGTTATATAGGCTCAGTTTCCTTTTTAGATACTGTGCTACAAGTTGTTGAGA
EST: gi|86471052|gb|DY237422.1|DY237422
EST:     TGAAGGACTGGAGGAAAATCAGTTGCTTCATTATACCCATTTATTAACAG                         GTTATATAGGCTCAGTTTCCTTTTTAGATACTGTGCTACAAGTTGTTGAGA
genomic: TGAAGGACTGGAGGAAAATCAGTTGCTTCATTATACCCATTTATTAACAGgtgaaactag ... tggttctcagGTTATATAGGCTCAGTTTCCTTTTTAGATACTGTGCTACAAGTTGTTGAGA
EST: gi|67022839|gb|CO451588.1|CO451588
EST:     TGAAGGACTGGAGGAAAATCAGTTGCTTCATTATACCCATTTATTAACAG                         GTTATATAGGCTCAGTTTCCTTTTTAGATACTGTGCTACAAGTTGTTGAGA
genomic: TGAAGGACTGGAGGAAAATCAGTTGCTTCATTATACCCATTTATTAACAGgtgaaactag ... tggttctcagGTTATATAGGCTCAGTTTCCTTTTTAGATACTGTGCTACAAGTTGTTGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatatatatatacacacacacacacaaagtgacatgctgtttatggttctcagGTTATATAGGCTCAGTTTCCTTTTTAGATACTGTGCTACAAGTTGTTGAGAAATTGCGATCAGTTAATCCTGATCTTGTATATG
                                                ttctc  CT-rich tract
     atatatataca  TA-rich tract