1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...tctgctttgatagtttcctcataactccatttcctaataatctaacagctcaaaagaagacagacattcagttctgacaatggattctgcatttatgtagATTGGCTTCAACGCCTGCAATGTTCAACAGTACACTTACAGAAGATGAGAGAAGTCATTTACCTGTTGATGGAGCCATAATGATAACAG
species | Zea mays |
transcript | GRMZM2G069676_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCAGTCACTCATGGAATCACTACTGCTGGACACGATATCCTACAGTTTGG ATTGGCTTCAACGCCTGCAATGTTCAACAGTACACTTACAGAAGATGAGAGEST: gi|76289294|gb|DV028862.1|DV028862
genomic: GCAGTCACTCATGGAATCACTACTGCTGGACACGATATCCTACAGTTTGGgtgagttgaa ... atttatgtagATTGGCTTCAACGCCTGCAATGTTCAACAGTACACTTACAGAAGATGAGAG
EST: GCAGTCACTCATGGAATCACTACTGCTGGACACGATATCCTACAGTTTGG ATTGGCTTCAACGCCTGCAATGTTCAACAGTACACTTACAGAAGATGAGAGEST: gi|18659547|gb|BM500395.1|BM500395
genomic: GCAGTCACTCATGGAATCACTACTGCTGGACACGATATCCTACAGTTTGGgtgagttgaa ... atttatgtagATTGGCTTCAACGCCTGCAATGTTCAACAGTACACTTACAGAAGATGAGAG
EST: GCAGTCACTCATGGAATCACTACTGCTGGACACGATATCCTACAGTTTGG ATTGGCTTCAACGCCTGCAATGTTCAACAGTACACTTACAGAAGATGAGAGEST: gi|101389188|gb|EB816549.1|EB816549
genomic: GCAGTCACTCATGGAATCACTACTGCTGGACACGATATCCTACAGTTTGGgtgagttgaa ... atttatgtagATTGGCTTCAACGCCTGCAATGTTCAACAGTACACTTACAGAAGATGAGAG
EST: GCAGTCACTCATGGAATCACTACTGCTGGACACGATATCCTACAGTTTGG ATTGGCTTCAACGCCTGCAATGTTCAACAGTACACTTACAGAAGATGAGAG
genomic: GCAGTCACTCATGGAATCACTACTGCTGGACACGATATCCTACAGTTTGGgtgagttgaa ... atttatgtagATTGGCTTCAACGCCTGCAATGTTCAACAGTACACTTACAGAAGATGAGAG
cagctcaaaagaagacagacattcagttctgacaatggattctgcatttatgtagATTGGCTTCAACGCCTGCAATGTTCAACAGTACACTTACAGAAGATGAGAGAAGTCATTTACCTGTTGATGGAGCCATAATGATAACAG
ttctgac putative branch site (score: 264)
atttatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgctttgatagtttcctcataactccatttcctaataatctaacagctcaaaagaagacagacattcagttctgacaatggattctgcatttatgtagATTGGCTTCAACGCCTGCAATGTTCAACAGTACACTTACAGAAGATGAGAGAAGTCATTTACCTGTTGATGGAGCCATAATGATAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
-ctgcttt
- - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attctgc