Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacggtagtaaagtctcctgctcctcttggctgcagctgctcacctgtactgtacgccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGATTGCACCCGGAAGCTGCTCGCCTGGGGAGCGGATCGTCTCCGGAGGGAT

Basic information

species Zea mays
transcript GRMZM2G069162_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G069162_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os05g02130.1 (Oryza sativa), 3'ss of exon 5
------------------------------------gtacggtagtaaagtctcctgctc------ctcttggctgcagctgctcacctgtac-----tgtacgccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGATTGCACCCGGAAGCTGCTCGCCTGGGGAGCGGATCGTCTCCGGAGGGAT
                                    ||  |||  | |  | | | ||||       || | ||| |   |||| |   ||       |||     | ||||| || ||||| ||||||||||| ||  | || ||||| ||||||| | ||||||||| | |||||||||| ||||||||||| ||||| ||||  ||||||
gtaatgctgctgatcttggtggcatcccaaattaatgtttggtgatcagctgttcagctctgttggttccttgctaccagtgctgattcgtgtggtggtgttgtttgatgcagCTTCCCTGGAAGCACGTCGCTTCATTTGGCTGCTCGTAGCGGGAACTTGGATTGCATCAGGAAGCTGCTTGCCTGGGGAGCTGATCGGCTCCAAAGGGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149010154|gb|EE041967.2|EE041967
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|148932463|gb|EC876197.2|EC876197
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAG
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAG
EST: gi|91876743|gb|EB406700.1|EB406700
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACG
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACG
EST: gi|50325257|gb|CO520383.1|CO520383
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCT
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCT
EST: gi|71449909|gb|DR830959.1|DR830959
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCTGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|148938650|gb|EC882982.2|EC882982
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGT
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGT
EST: gi|71313857|gb|DR793525.1|DR793525
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|149112247|gb|EE295151.2|EE295151
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|76913183|gb|DV165033.1|DV165033
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|149085044|gb|EE174553.2|EE174553
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|71320952|gb|DR797192.1|DR797192
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|148967178|gb|EE018364.2|EE018364
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|71432311|gb|DR813361.1|DR813361
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|50328517|gb|CO523643.1|CO523643
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATA-GG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|76014676|gb|DT941846.1|DT941846
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|71449368|gb|DR830418.1|DR830418
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTTCCTGGTAGCACGTCGCTG
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTT-CCTGGTAGCACGTCGCTG
EST: gi|78081585|gb|DV509997.1|DV509997
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|148982737|gb|EE028556.2|EE028556
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGT
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGT
EST: gi|50335142|gb|CO530268.1|CO530268
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|71768259|gb|DR966196.1|DR966196
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|78080357|gb|DV508769.1|DV508769
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|148949274|gb|EC894718.2|EC894718
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|76013282|gb|DT940452.1|DT940452
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|148953967|gb|EC899355.2|EC899355
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGC
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGC
EST: gi|148945991|gb|EC891286.2|EC891286
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|67014789|gb|CO443538.1|CO443538
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTCCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|93283971|gb|EB676235.1|EB676235
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTG
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTG
EST: gi|33466680|gb|CF243729.1|CF243729
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|94472164|gb|EB701122.1|EB701122
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|71423338|gb|DR806006.1|DR806006
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|149111573|gb|EE190708.2|EE190708
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|148951595|gb|EC897330.2|EC897330
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|76284670|gb|DV024238.1|DV024238
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACGGGCTCATACGG                         GTTTCCTGTTAGCACGTCGCTGCACCTCGCCGCTC
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTC
EST: gi|148952353|gb|EC898166.2|EC898166
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|71772502|gb|DR970434.1|DR970434
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|76010938|gb|DT938108.1|DT938108
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|101399477|gb|EB821611.1|EB821611
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|91054246|gb|EB164664.1|EB164664
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTC
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTC
EST: gi|149096259|gb|EE181967.2|EE181967
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACC
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACC
EST: gi|91054647|gb|EB165065.1|EB165065
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|50323631|gb|CO518757.1|CO518757
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCA
EST: gi|93281560|gb|EB673824.1|EB673824
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|148987274|gb|EE031110.2|EE031110
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|71304552|gb|DR788396.1|DR788396
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|148982960|gb|EE028846.2|EE028846
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|71438367|gb|DR819417.1|DR819417
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|149113145|gb|EE295904.2|EE295904
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|149070411|gb|EE158812.2|EE158812
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|101388700|gb|EB816333.1|EB816333
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|71764076|gb|DR962013.1|DR962013
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|89761791|gb|DY689663.1|DY689663
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCACCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|148995650|gb|EE034862.2|EE034862
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|148966812|gb|EE017914.2|EE017914
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA
EST: gi|148948691|gb|EC898606.2|EC898606
EST:     GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGG                         GTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGAGAGCCTGGA
genomic: GCGCTGCTGGAGAACGGTGCCATCGTCTCCGCTTTGACCGGCTCATACGGgtacggtagt ... gccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtctcctgctcctcttggctgcagctgctcacctgtactgtacgccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGATTGCACCCGGAAGCTGCTCGCCTGGGGAGCGGATCGTCTCCGGAGGGAT
                           tgctcac  putative branch site (score: 2)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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gtacggtagtaaagtctcctgctcctcttggctgcagctgctcacctgtactgtacgccgctgcagGTTTCCTGGTAGCACGTCGCTGCACCTCGCCGCTCGCAGCGGGAGCCTGGATTGCACCCGGAAGCTGCTCGCCTGGGGAGCGGATCGTCTCCGGAGGGAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT