Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtactcactcactcagcagtgaatctcgcagcggtggtggctgagaagagctaatattatatctgtgaggaaggggttgcatattcatattcttattgcttttgttggtctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTGGAGCACCCCTACTTCAAAGATGTGAGGAAGGGAGATGCGCACTGACTGA

Basic information

species Zea mays
transcript GRMZM2G068193_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G068193_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os08g40170.1 (Oryza sativa), 3'ss of exon 5
------------------------------------gtcagtactcactcactcagcagtgaatctcgcagcggtggtggctgagaagagctaatattatatctgtgaggaaggggttgcatattcat----attct--tattgcttttgttggtctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTGGAGCACCCCTACTTCAAAGATGTGAGGAAGGGAGATGCGCACTGACTGA
                                    |    |  ||    |||    | |  || |  ||  | | |  |   |    | |    |    |  ||  || |||| |||    ||| |     || ||   || | | |||||  ||   |||||||| ||||| | ||||||||| ||||||||||| | |||||||||||| ||||||| ||||||||||| || ||||  ||||            |   ||
gtttgtactatgctgcttttgctcgttgctatacttgattattttcttctacttcaaaatcgatgt-acaatgttaggtgtaaactgtatcatgaacgtaaaatggaagaaaggtgttatcaattgaattgaatcctgacatggttcttgttt-tcgattgcagAAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATGGAGCATCCCTACTTCAACGACGTGAACAAGGAGCTCTACTGAAGGTCGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211123599|gb|FL454341.1|FL454341
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|12972075|gb|BG267801.1|BG267801
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|50339520|gb|CO534646.1|CO534646
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|78105695|gb|DV524113.1|DV524113
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|91873817|gb|EB403774.1|EB403774
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|50336340|gb|CO531466.1|CO531466
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|18383612|gb|BM416812.1|BM416812
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         GAATTGCTGGAATACGAGCCAGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|76018820|gb|DT945990.1|DT945990
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|86471384|gb|DY237754.1|DY237754
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|60340813|gb|DN207786.1|DN207786
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCAGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|60351484|gb|DN218457.1|DN218457
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|50325592|gb|CO520718.1|CO520718
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|211319984|gb|FK976018.1|FK976018
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGSCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|21843207|gb|BQ703788.1|BQ703788
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCAGCGAAGCGGATCCCCGCGAAGAAGGNCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|211123598|gb|FL454340.1|FL454340
EST:     TGTCTRMTCTTGTGCCCGGCCTCGACGYTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|89247623|gb|DY619409.1|DY619409
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATTTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|211420173|gb|FL463555.1|FL463555
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|161583485|gb|EY957336.1|EY957336
EST:     CGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCAGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: CGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|211247009|gb|FL481691.1|FL481691
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|78024362|gb|DV492749.1|DV492749
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|86468767|gb|DY235137.1|DY235137
EST:     TGTCTGTTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|71303928|gb|DR788084.1|DR788084
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|211431897|gb|FL073247.1|FL073247
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|74240146|gb|DT648060.1|DT648060
EST:     TGTTTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|18179920|gb|BM381130.1|BM381130
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|101384207|gb|EB814148.1|EB814148
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|211319985|gb|FK976019.1|FK976019
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCNCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|31405807|gb|CD484539.1|CD484539
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|89757627|gb|DY687149.1|DY687149
EST:     TGTCTGTTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|101392378|gb|EB818118.1|EB818118
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|76922225|gb|DV168906.1|DV168906
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|60356285|gb|DN223258.1|DN223258
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|6021604|gb|AW066532.1|AW066532
EST:     TGTTTGCTCTTGTGCCCGGCCTCGACGNTGATGGCTTCGATTTTCTTGAG                         AAATTGCTGGAATTCGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|93283535|gb|EB675799.1|EB675799
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|32945307|gb|CF050126.1|CF050126
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGGAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|71329065|gb|DR801241.1|DR801241
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|86471024|gb|DY237394.1|DY237394
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|50338053|gb|CO533179.1|CO533179
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|21626004|gb|BQ620925.1|BQ620925
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCAGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|60337211|gb|DN204184.1|DN204184
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|60337212|gb|DN204185.1|DN204185
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|32938708|gb|CF043527.1|CF043527
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|91878044|gb|EB408001.1|EB408001
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|71431252|gb|DR812302.1|DR812302
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|71766503|gb|DR964440.1|DR964440
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|71430256|gb|DR811306.1|DR811306
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|74239489|gb|DT647403.1|DT647403
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|60354544|gb|DN221517.1|DN221517
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|211319986|gb|FK976020.1|FK976020
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCG
EST: gi|31910221|gb|CD651315.1|CD651315
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|88748411|gb|DY532552.1|DY532552
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
EST: gi|21088773|gb|BQ401086.1|BQ401086
EST:     TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAG                         AAATTGCTGGAATACGAGCCAGCGAAGCGGATCCCCGCGAAGAAGGCCCTG
genomic: TGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 304

CGGCAAGCTGCCCAACTGGCACGAGTACCCCCAGTGGAAGCCGACGAAGCTGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTGGAGCACCCCTACTTCAAAGATGTGAGGAAGGGAGATGCGCACTGACTGA


Block sizes: 47 (upstream exon), 47 (downstream exon)
Score: 15

CGGCAAGCTGCCCAACTGGCACGAGTACCCCCAGTGGAAGCCGACGAAGCTGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTGGAGCACCCCTACTTCAAAGATGTGAGGAAGGGAGATGCGCACTGACTGA


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 26

CGGCAAGCTGCCCAACTGGCACGAGTACCCCCAGTGGAAGCCGACGAAGCTGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTGGAGCACCCCTACTTCAAAGATGTGAGGAAGGGAGATGCGCACTGACTGA


Block sizes: 45 (upstream exon), 48 (downstream exon)
Score: 31

CGGCAAGCTGCCCAACTGGCACGAGTACCCCCAGTGGAAGCCGACGAAGCTGTCTGCTCTTGTGCCCGGCCTCGACGCTGATGGCTACGATCTTCTTGAGgtcagtactc ... tctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTGGAGCACCCCTACTTCAAAGATGTGAGGAAGGGAGATGCGCACTGACTGA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgaggaaggggttgcatattcatattcttattgcttttgttggtctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTGGAGCACCCCTACTTCAAAGATGTGAGGAAGGGAGATGCGCACTGACTGA
                 atattcatattcttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcagtactcactcactcagcagtgaatctcgcagcggtggtggctgagaagagctaatattatatctgtgaggaaggggttgcatattcatattcttattgcttttgttggtctgctgcagAAATTGCTGGAATACGAGCCGGCGAAGCGGATCCCCGCGAAGAAGGCCCTGGAGCACCCCTACTTCAAAGATGTGAGGAAGGGAGATGCGCACTGACTGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG