1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aatagctagccatatggtgtacattccctctgccccttttatttcactttctctaatcttggaatgcaagaatactgaataagtcattttatgttttcagAAATGCACAGAGATGGGGGAACTGGGCTAGCTCCCTGGCCTGCCCGATTGACAGCCCCGCCTCCCCGTCTTGCTGATTTGTACATTACTGCTGACACATT
species | Zea mays |
transcript | GRMZM2G067764_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTCAGTATGGGGAGTTCCAATGGAAGCTTGCATTACTCCGTATCCTGAAC AAATGCACAGAGATGGGGGAACTGGGCTAGCTCCCTGGCCTGCCCGATTGAEST: gi|211213071|gb|FK975872.1|FK975872
genomic: TTCAGTATGGGGAGTTCCAATGGAAGCTTGCATTACTCCGTATCCTGAACgtgagtaatt ... atgttttcagAAATGCACAGAGATGGGGGAACTGGGCTAGCTCCCTGGCCTGCCCGATTGA
EST: TTCAGTATGGGGAGTTCCAATGGAAGCTTGCATTACTCCGTATCCTGAAC AAATGCACAGAGATGGGGEST: gi|211213070|gb|FK975871.1|FK975871
genomic: TTCAGTATGGGGAGTTCCAATGGAAGCTTGCATTACTCCGTATCCTGAACgtgagtaatt ... atgttttcagAAATGCACAGAGATGGGG
EST: TTCAGTATGGGGAGTTCCAATGGAAGCTTGCATTACTCCGTATCCTGAAC AAATGCACAGAGATGGGGGAACTGGGCTAGCTCCCTGGCCTGCCCGATTGAEST: gi|78180182|gb|DV550555.1|DV550555
genomic: TTCAGTATGGGGAGTTCCAATGGAAGCTTGCATTACTCCGTATCCTGAACgtgagtaatt ... atgttttcagAAATGCACAGAGATGGGGGAACTGGGCTAGCTCCCTGGCCTGCCCGATTGA
EST: TTCAGTATGGGGAGTTCCAATGGAAGCTTGCATTACTCCGTATCCTGAAC AAATGCACAGAGATGGGGGAACTGGGCTAGCTCCCTGGCCTGCCCGATTGAEST: gi|32855543|gb|CD995224.1|CD995224
genomic: TTCAGTATGGGGAGTTCCAATGGAAGCTTGCATTACTCCGTATCCTGAACgtgagtaatt ... atgttttcagAAATGCACAGAGATGGGGGAACTGGGCTAGCTCCCTGGCCTGCCCGATTGA
EST: TTCAGTATGGGGAGTTCCAATGGAATCTTGCATTACTCCGTATCCTTATT TAATGCACAGAGATGGGGGAACTGGGCTAGCTCCCTGGCCTGCCCGATTGAEST: gi|20300384|gb|BQ163327.1|BQ163327
genomic: TTCAGTATGGGGAGTTCCAATGGAAGCTTGCATTACTCCGTATCCTGAACgtgagtaatt ... atgttttcagAAATGCACAGAGATGGGGGAACTGGGCTAGCTCCCTGGCCTGCCCGATTGA
EST: TTCAGTATGGGGAGTTCCAATGGAAGCTTGCATTACTCCGTATCCTGAAC AAATGCACAGAGATGGGGGAACTGGGCTAGCTCCCTGGCCTGCCCGATTGAEST: gi|211213072|gb|FK975873.1|FK975873
genomic: TTCAGTATGGGGAGTTCCAATGGAAGCTTGCATTACTCCGTATCCTGAACgtgagtaatt ... atgttttcagAAATGCACAGAGATGGGGGAACTGGGCTAGCTCCCTGGCCTGCCCGATTGA
EST: TTCAGTATGGGGAGTTCCAATGGAAGCTTGCATTACTCCGTATCCTGAAC AAATGCACAGAGATGGGGGAACTGGGCTAGCTCCCTGGCCTGCCCGATTGAEST: gi|12046628|gb|BF728767.1|BF728767
genomic: TTCAGTATGGGGAGTTCCAATGGAAGCTTGCATTACTCCGTATCCTGAACgtgagtaatt ... atgttttcagAAATGCACAGAGATGGGGGAACTGGGCTAGCTCCCTGGCCTGCCCGATTGA
EST: TTCAGTATGGGGAGTTCCAATGGAAGCTTGCATTACTCCGTATCCTGAAC AAATGCACAGAGATGGGGGAACTGGGCTAGCTCCCTGGCCTGCCCGATTGA
genomic: TTCAGTATGGGGAGTTCCAATGGAAGCTTGCATTACTCCGTATCCTGAACgtgagtaatt ... atgttttcagAAATGCACAGAGATGGGGGAACTGGGCTAGCTCCCTGGCCTGCCCGATTGA
actttctctaatcttggaatgcaagaatactgaataagtcattttatgttttcagAAATGCACAGAGATGGGGGAACTGGGCTAGCTCCCTGGCCTGCCCGATTGACAGCCCCGCCTCCCCGTCTTGCTGATTTGTACATTACTGCTGACACATT
ctctaat putative branch site (score: 80)
tgttttc putative PPT
aataagtcattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatagctagccatatggtgtacattccctctgccccttttatttcactttctctaatcttggaatgcaagaatactgaataagtcattttatgttttcagAAATGCACAGAGATGGGGGAACTGGGCTAGCTCCCTGGCCTGCCCGATTGACAGCCCCGCCTCCCCGTCTTGCTGATTTGTACATTACTGCTGACACATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - -ccatatg
- - - - - - - - - - -cattccc
- - - - - - - - - - - - - - -ctgcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgaat