1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtttgtgtccagcgctcttcccactagcttgctcttaggacaaacttgcaaggtacaagagtaacttaaaagcagagaaggcacctaagccttcactggaataggattatacaagattgcagcagatacatgattgtttacaatgtcccttgtgcttgcagCCGGGAGAAGTTCAGCGAGATGCATGCCAGGCTGTGGTGGGAAGAGAACCGAGCGAGGATACACGAACAATACCTCTGAGAAGAGACGCCCGACACCATC
species | Zea mays |
transcript | GRMZM2G066672_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATCCGGGCTTTACCTGGTGGGATCAGAGAGCTTCGCCGCGTTCGGTTCAG CCGGGAGAAGTTCAGCGAGATGCATGCCAGGCTGTGGTGGGAAGAGAACCGEST: gi|71427814|gb|DR808864.1|DR808864
genomic: ATCCGGGCTTTACCTGGTGGGATCAGAGAGCTTCGCCGCGTTCGGTTCAGgtttgtgtcc ... gtgcttgcagCCGGGAGAAGTTCAGCGAGATGCATGCCAGGCTGTGGTGGGAAGAGAACCG
EST: ATCCGGGCTTTACCTGGTGGGATCAGAGAGCTTCGCCGCGTTCGGTTCAG CCGGGAGAAGTTCAGCGAGATGCATGCCAGGCTGTGGTGGGAAGAGAACCGEST: gi|86467047|gb|DY233417.1|DY233417
genomic: ATCCGGGCTTTACCTGGTGGGATCAGAGAGCTTCGCCGCGTTCGGTTCAGgtttgtgtcc ... gtgcttgcagCCGGGAGAAGTTCAGCGAGATGCATGCCAGGCTGTGGTGGGAAGAGAACCG
EST: ATCCGGGCTTTACCTGGTGGGATCAGAGAGCTTCGCCGCGTTCGGTTCAG CCGGGAGAAGTTCAGCGAGATGCATGCCAGGCTGTGGTGGGAAGAGAACCGEST: gi|211009986|gb|FL448380.1|FL448380
genomic: ATCCGGGCTTTACCTGGTGGGATCAGAGAGCTTCGCCGCGTTCGGTTCAGgtttgtgtcc ... gtgcttgcagCCGGGAGAAGTTCAGCGAGATGCATGCCAGGCTGTGGTGGGAAGAGAACCG
EST: ATCCGGGCTTTACCTGGTGGGATCAGAGAGCTTCGCCGCGTTCGGTTCAG CCGGGAGAAGTTCAGCGAGATGCATGCCAGGCTGTGGTGGGAAGAGAACCGEST: gi|211009987|gb|FL448381.1|FL448381
genomic: ATCCGGGCTTTACCTGGTGGGATCAGAGAGCTTCGCCGCGTTCGGTTCAGgtttgtgtcc ... gtgcttgcagCCGGGAGAAGTTCAGCGAGATGCATGCCAGGCTGTGGTGGGAAGAGAACCG
EST: ATCCGGGCTTTACCTGGTGGGATCAGAGAGCTTCGCCGCGTTCGGTTCAG CCGGGAGAAGTTCAGCGAGATGCATGCCAGGCTGTGGTGGGAAGAGAACCG
genomic: ATCCGGGCTTTACCTGGTGGGATCAGAGAGCTTCGCCGCGTTCGGTTCAGgtttgtgtcc ... gtgcttgcagCCGGGAGAAGTTCAGCGAGATGCATGCCAGGCTGTGGTGGGAAGAGAACCG
ttatacaagattgcagcagatacatgattgtttacaatgtcccttgtgcttgcagCCGGGAGAAGTTCAGCGAGATGCATGCCAGGCTGTGGTGGGAAGAGAACCGAGCGAGGATACACGAACAATACCTCTGAGAAGAGACGCCCGACACCATC
tcccttgt CT-rich tract
attgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgtccagcgctcttcccactagcttgctcttaggacaaacttgcaaggtacaagagtaacttaaaagcagagaaggcacctaagccttcactggaataggattatacaagattgcagcagatacatgattgtttacaatgtcccttgtgcttgcagCCGGGAGAAGTTCAGCGAGATGCATGCCAGGCTGTGGTGGGAAGAGAACCGAGCGAGGATACACGAACAATACCTCTGAGAAGAGACGCCCGACACCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA