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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaatcttccttccgtcagagtagtaccgctcggccggtgaacactaatgagaactgtctcgtgacgcagGATGTTATGGATGACATAAATCTCTTCTCGGTGATCACTGTGCTGTCGTTTCTGCTGTCCTGCCCTCTGATGATCTTTGCCGAAGGCATCAAGTTCACCC

Basic information

species Zea mays
transcript GRMZM2G066413_T02
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211269384|gb|FL189988.1|FL189988
EST:     CCAACCAATCGAGGAACGTCCTCAGCAAGAAACTCCTTGCCGGTGACAAG                         GATGTTATGGATGACATAAATCTCTTCTCGGTGATCACTGTGCTGTCGTTT
genomic: CCAACCAATCGAGGAACGTCCTCAGCAAGAAACTCCTTGCCGGTGACAAGgtgaatcttc ... cgtgacgcagGATGTTATGGATGACATAAATCTCTTCTCGGTGATCACTGTGCTGTCGTTT
EST: gi|67024608|gb|CO453357.1|CO453357
EST:     CCAACCAATCGAGGAACGTCCTCAGCAAGAAACTCCTTGCCGGTGACAAG                         GATGTTATGGATGACATAAATCTCTTCTCGGTGATCACTGTGCTGTCGTTT
genomic: CCAACCAATCGAGGAACGTCCTCAGCAAGAAACTCCTTGCCGGTGACAAGgtgaatcttc ... cgtgacgcagGATGTTATGGATGACATAAATCTCTTCTCGGTGATCACTGTGCTGTCGTTT
EST: gi|6672190|gb|AW282363.1|AW282363
EST:     GAACGTCCTCAGCAAGAAACTCCTTGCCGGTGGCAAG                         GATGTTATGGATGACATAAATCTCTTCTCGGTGATCACTGTGCTGTCGTTT
genomic: GAACGTCCTCAGCAAGAAACTCCTTGCCGGTGACAAGgtgaatcttc ... cgtgacgcagGATGTTATGGATGACATAAATCTCTTCTCGGTGATCACTGTGCTGTCGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagagtagtaccgctcggccggtgaacactaatgagaactgtctcgtgacgcagGATGTTATGGATGACATAAATCTCTTCTCGGTGATCACTGTGCTGTCGTTTCTGCTGTCCTGCCCTCTGATGATCTTTGCCGAAGGCATCAAGTTCACCC
                           cactaat  putative branch site (score: 2)
                                       ctgtctc  putative PPT