1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtggcgacatcacatcccctacaagtttgctaatgtgaatatgtgatagctctttcaggtttgaaagctaggaatatgttaggcaaacttattttcttttaattgttatgtttatctattgaaacctttgcaagaaacaagcctcttatacagctcttcagataactgagcagttcctttttcttagATATGACAAACCAGCAGTTAATGGATCAAGGCAATCAACTAATGGATGAAACTGATCAAGCTATTGCACGATCTAAGCAG
species | Zea mays |
transcript | GRMZM2G065105_T04 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCCAAGTGCTGAAGATGGCTTTGGTGAAGAAAATGTCCTGTTAGCATCAA ATATGACAAACCAGCAGTTAATGGATCAAGGCAATCAACTAATGGATGEST: gi|211525553|gb|FL441938.1|FL441938
genomic: GCCAAGTGCTGAAGATGGCTTTGGTGAAGAAAATGTCCTGTTAGCATCAAgtaagtggcg ... tttttcttagATATGACAAACCAGCAGTTAATGGATCAAGGCAATCAACTAATGGATG
EST: GCCAAGTGCTGAAGATGGCTTTGGTGAA-AAAATGTCTTGTTAGCATCAA ATATGACAAACCAGCAGTTAATGGATCAAGGCAATCAACTAATGGATGAAAEST: gi|211162284|gb|FL231527.1|FL231527
genomic: GCCAAGTGCTGAAGATGGCTTTGGTGAAGAAAATGTCCTGTTAGCATCAAgtaagtggcg ... tttttcttagATATGACAAACCAGCAGTTAATGGATCAAGGCAATCAACTAATGGATGAAA
EST: GCCAAGTGCTGAAGATGGCTTTGGTGAAGAAAATGTCCTGTTAGCATCAA ATATGACAAACCAGCAGTTAATGGATCAAGGGCA-TCAACTAATGGATGAAEST: gi|211357114|gb|FL231560.1|FL231560
genomic: GCCAAGTGCTGAAGATGGCTTTGGTGAAGAAAATGTCCTGTTAGCATCAAgtaagtggcg ... tttttcttagATATGACAAACCAGCAGTTAATGGATCAAGG-CAATCAACTAATGGATGAA
EST: GCCAAGTGCTGAAGATGGCTTTGGTGAAGAAAATGTCCTGTTAGCATCAA ATATGACAAACCAGCAGTTAATGGATCAAGGCAATCAACTA
genomic: GCCAAGTGCTGAAGATGGCTTTGGTGAAGAAAATGTCCTGTTAGCATCAAgtaagtggcg ... tttttcttagATATGACAAACCAGCAGTTAATGGATCAAGGCAATCAACTA
agaaacaagcctcttatacagctcttcagataactgagcagttcctttttcttagATATGACAAACCAGCAGTTAATGGATCAAGGCAATCAACTAATGGATGAAACTGATCAAGCTATTGCACGATCTAAGCAG
agataac putative branch site (score: 3)
cagttcctttttctt putative PPT
tttttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtggcgacatcacatcccctacaagtttgctaatgtgaatatgtgatagctctttcaggtttgaaagctaggaatatgttaggcaaacttattttcttttaattgttatgtttatctattgaaacctttgcaagaaacaagcctcttatacagctcttcagataactgagcagttcctttttcttagATATGACAAACCAGCAGTTAATGGATCAAGGCAATCAACTAATGGATGAAACTGATCAAGCTATTGCACGATCTAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT