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gtacgtgacagtatctttctcttaacttgaatcaaaatgcagaaatagcatacagtattatttatgtctcccatgttttccctcgaagaaaaagAACTCTGGGAGCAAGGTCGAGTCTGCTATTGTTG
species | Zea mays |
transcript | GRMZM2G065012_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTAAAAAACTA AACTCTGGGAGCAAGGTCGAGTCTGCTATTGTTGEST: gi|71333237|gb|DR803673.1|DR803673
genomic: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTAAAAAACTAgtacgtgaca ... gaagaaaaagAACTCTGGGAGCAAGGTCGAGTCTGCTATTGTTG
EST: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTNNNNNNNNN NEST: gi|71333237|gb|DR803673.1|DR803673
genomic: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTAAAAAACTAgtacgtgaca ... gaagaaaaag-
EST: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTNNNNNNNNN NEST: gi|71333237|gb|DR803673.1|DR803673
genomic: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTAAAAAACTAgtacgtgaca ... gaagaaaaag-
EST: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTNNNNNNNNN NEST: gi|71333237|gb|DR803673.1|DR803673
genomic: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTAAAAAACTAgtacgtgaca ... gaagaaaaag-
EST: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTNNNNNNNNN NEST: gi|71333237|gb|DR803673.1|DR803673
genomic: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTAAAAAACTAgtacgtgaca ... gaagaaaaag-
EST: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTNNNNNNNNN NEST: gi|71333237|gb|DR803673.1|DR803673
genomic: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTAAAAAACTAgtacgtgaca ... gaagaaaaag-
EST: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTNNNNNNNNN NEST: gi|71333237|gb|DR803673.1|DR803673
genomic: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTAAAAAACTAgtacgtgaca ... gaagaaaaag-
EST: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTNNNNNNNNN NEST: gi|71769027|gb|DR966964.1|DR966964
genomic: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTAAAAAACTAgtacgtgaca ... gaagaaaaag-
EST: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTNNNNNNNNN NEST: gi|71769027|gb|DR966964.1|DR966964
genomic: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTAAAAAACTAgtacgtgaca ... gaagaaaaag-
EST: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTNNNNNNNNN NEST: gi|71769027|gb|DR966964.1|DR966964
genomic: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTAAAAAACTAgtacgtgaca ... gaagaaaaag-
EST: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTNNNNNNNNN NEST: gi|71769027|gb|DR966964.1|DR966964
genomic: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTAAAAAACTAgtacgtgaca ... gaagaaaaag-
EST: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTNNNNNNNNN NEST: gi|71769027|gb|DR966964.1|DR966964
genomic: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTAAAAAACTAgtacgtgaca ... gaagaaaaag-
EST: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTNNNNNNNNN NEST: gi|71769027|gb|DR966964.1|DR966964
genomic: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTAAAAAACTAgtacgtgaca ... gaagaaaaag-
EST: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTNNNNNNNNN NEST: gi|71769027|gb|DR966964.1|DR966964
genomic: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTAAAAAACTAgtacgtgaca ... gaagaaaaag-
EST: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTNNNNNNNNN N
genomic: ATCTCGAGAAGTTGCAGCTCCCCACAATGGATGGTCTGGCTAAAAAACTAgtacgtgaca ... gaagaaaaag-
cagaaatagcatacagtattatttatgtctcccatgttttccctcgaagaaaaagAACTCTGGGAGCAAGGTCGAGTCTGCTATTGTTG
ttttccctcg CT-rich tract
atacagtattatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtgacagtatctttctcttaacttgaatcaaaatgcagaaatagcatacagtattatttatgtctcccatgttttccctcgaagaaaaagAACTCTGGGAGCAAGGTCGAGTCTGCTATTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG