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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaaaaaagcacacagccaagtttctgtgcttgcagttatctctattccaaaaaattatctgaccccttgtattatgcagCTTTGCAGAGCGCTCGTGAAGGCTTATGCTATGAACCCCTTGCTCCATGCGCCAGTACTTTTCTTCTTCGTTCCTTTACTCATGGTGTTTGCCATCTACA

Basic information

species Zea mays
transcript GRMZM2G064723_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G064723_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g66920.1 (Oryza sativa), 3'ss of exon 3
gtacaaaaaagca-cacagccaagtttctgtgcttgcagttatctctattccaaaaaattatctgac--cccttgtattatgcagCTTTGCAGAGCGCTCGTGAAGGCTTATGCTATGAACCCCTTGCTCCATGCGCCAGTACTTTTCTTCTTCGTTCCTTTACTCATGGTGTTTGCCATCTACA
||| | |     |   ||  | | |||||||  ||||| ||||||||| |   ||||    ||||||  |  ||| ||| ||||||  ||||| || || |||||||||||||| ||||||||  |  ||||  ||||||||| |||||||||| ||||  | ||||| | |||||| |||||||
gtatacactgttaatccatgctaatttctgtatttgcaattatctctagtttgaaaatagttctgacatcttttgcattgtgcagCACTGCAGGGCTCTTGTGAAGGCTTATGCGATGAACCCTGTAATCCACTCGCCAGTACATTTCTTCTTCATTCCAGTGCTCATAGCGTTTGCTATCTACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgcttgcagttatctctattccaaaaaattatctgaccccttgtattatgcagCTTTGCAGAGCGCTCGTGAAGGCTTATGCTATGAACCCCTTGCTCCATGCGCCAGTACTTTTCTTCTTCGTTCCTTTACTCATGGTGTTTGCCATCTACA
                                atctgac  putative branch site (score: 3)
                                      ccccttgt  CT-rich tract
                  tattccaaaaaattat  TA-rich tract