1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ctatgctgtatgaaagtcattacctcatgcttttagtttgcaatatttccttgcatattgaagatttctagagattgatactctatgttctcttcggcagGTCTACTTGTGTGAGAAACTATCTCTTACTAATGAGATGTACTTCGCCATCACCCTTGATAGGAAAACTGCTGGTCCG
species | Zea mays |
transcript | GRMZM2G064695_T04 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTAAAATGTTAGGCCAGATTCTGATAACGAAACAAACTGGTCCAGAGGGAAAGATTGTGAGCAAGEST: gi|13382325|gb|BG459000.1|BG459000
genomic: TTCTGATAACGAAACAAACTGGTCCAGAGGGAAAGATTGTGAGCAAGgttagaactt ... tcttcggcagG
EST: AGATTCTGATAACGAAACAAACTGGTCCAGAGGGAAAGATTGTGAGCAAG GTCTACTTGTGTGAGAAACTATCTCTTACTAATGAGATGTACTTCGCCATCEST: gi|149094704|gb|EE180255.2|EE180255
genomic: AGATTCTGATAACGAAACAAACTGGTCCAGAGGGAAAGATTGTGAGCAAGgttagaactt ... tcttcggcagGTCTACTTGTGTGAGAAACTATCTCTTACTAATGAGATGTACTTCGCCATC
EST: GTAAAATGTTAGGCCAGATTCTGATAACGAAACAAACTGGTCCAGAGGGAAAGATTGTGAGCAAG
genomic: TTCTGATAACGAAACAAACTGGTCCAGAGGGAAAGATTGTGAGCAAGgttagaactt ... tcttcggcagG
tttccttgcatattgaagatttctagagattgatactctatgttctcttcggcagGTCTACTTGTGTGAGAAACTATCTCTTACTAATGAGATGTACTTCGCCATCACCCTTGATAGGAAAACTGCTGGTCCG
gattgat putative branch site (score: 4)
ctctatgttctcttc CT-rich tract
atattgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatgctgtatgaaagtcattacctcatgcttttagtttgcaatatttccttgcatattgaagatttctagagattgatactctatgttctcttcggcagGTCTACTTGTGTGAGAAACTATCTCTTACTAATGAGATGTACTTCGCCATCACCCTTGATAGGAAAACTGCTGGTCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG