Sequence
atgc intronic sequence ATGC exonic sequencegcacaaaaatttctcatgttatacaaattgtgtacgcaaaatggttgtgatgatgtggataattattattttgtcatattccagGGCGCAAATATACTTGTTGATAACAAAGGTTGCATTAAGCTAGCAGATTTTGGGGCATCTAAGCAAGTAGAAAAGTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G064613_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os08g32600.1 (Oryza sativa), 3'ss of exon 5
---------gcacaaaaatttc---tcatgttatacaaattgtgtacgcaaaatgg-ttgtga---tgatgtggataattattattttgtcatat-tccagGGCGCAAATATACTTGTTGATAACAAAGGTTGCATTAAGCTAGCAGATTTTGGGGCATCTAAGCAAGTAGAAAAGTTG
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gcatgaagagtattcgaattccgaattttgttgccttgaatgcttttgttgcgtgggttctaaatttgtaatgtgggattactgttttttcctatattcagGGAGCAAATATACTTGTTGATAATAAAGGATGCATTAAGTTAGCAGACTTTGGGGCCTCCAAGCAAGTGGAGAAGTTG
upper sequence: GRMZM2G064613_T03 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA20G28090.1 (Glycine max), 3'ss of exon 5
gcacaaaaatttctcatgttatacaaattgtgtacgcaaaatggttgtgatgatgtg--gataattattattttgtcatattccagGGCGCAAATATACTTGTTGATAACAAAGGTTGCATTAAGCTAGCAGATTTTGGGGCATCTAAGCAAGTAGAAAAGTTG
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gtattgtgcatttactt-ttata-agattttctgc-cttggtgttcgtctctatatcatgttgatcaatgctttgctggatat-agGGTGCCAACATTCTAGTTGATAACAAAGGGTGCATTAAACTCACAGACTTTGGGGCATCCAAGAAAGTTGTTGAACTG
upper sequence: GRMZM2G064613_T03 (Zea mays), 3'ss of exon 5
lower sequence: AT1G09000.1 (Arabidopsis thaliana), 3'ss of exon 5
gcacaaaaatttctc-atgttatacaaattgtgtacgcaaaatggttgtgatg-atgtggataattattattttgtcatattccagGGCGCAAATATACTTGTTGATAACAAAGGTTGCATTAAGCTAGCAGATTTTGGGGCATCTAAGCAAGTAGAAAAGTTG
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gtaacaatttttctccatactttataagt-gcttacaatctcgagtccttacccatgagacta--tatgtttctatgttttctcagGGGGCTAATATCCTTGTGGATAATAAAGGATGCATTAAGCTTGCTGATTTTGGTGCATCCAAACAAGTAGCTGAGTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgtacgcaaaatggttgtgatgatgtggataattattattttgtcatattccagGGCGCAAATATACTTGTTGATAACAAAGGTTGCATTAAGCTAGCAGATTTTGGGGCATCTAAGCAAGTAGAAAAGTTG
ttttgtc CT-rich tract
ataattattattttgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcacaaaaatttctcatgttatacaaattgtgtacgcaaaatggttgtgatgatgtggataattattattttgtcatattccagGGCGCAAATATACTTGTTGATAACAAAGGTTGCATTAAGCTAGCAGATTTTGGGGCATCTAAGCAAGTAGAAAAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG