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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acatcagattgatagatgttgaattaatagatgagaacattttcatgtcctaacttatgtgctgtgcttagtatagtataatttgcaacctttcttccagGTCAAAACTGTTGTTTCAATTCATCTCGGATTGACTATTATTTGGAGTATGAACCCCATCCGTCATCAACAAAAAATTTGCGGCATCTTTTCCAGA

Basic information

species Zea mays
transcript GRMZM2G064594_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G064594_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os09g01590.1 (Oryza sativa), 3'ss of exon 7
--acatcagattgatagatgttgaattaatagatgagaacattttcatgtcctaacttatgtgctgtgcttagtatagtataatttgcaacctttcttccagGTCAAAACTGTTGTTTCAATTCATCTCGGATTGACTATTATTTGGAGTATGAACCCCATCCGTCATCAACAAAAAATTTGCGGCATCTTTTCCAGA
     |    |  |  |||    || |  ||  || |    |||   ||   || ||| | ||    | |   |  | |  ||||| ||   |||||| ||||  |||||||||| |||||| ||||  ||||||| |||||||||||||||||||| ||||| ||||| ||||||||| |||  |||||||| ||||
atgggtttactccaaggataaataaattttaattgtggctttttatgtgatgtagcttgtttggaaggttctttggattg-aatttaca-tgtttctttcagGGGAAAACTGTTGCTTCAATACATCAAGGATTGATTATTATTTGGAGTATGAACCTCATCCATCATCGACAAAAAATCTGCACCATCTTTTTCAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211174253|gb|FL479890.1|FL479890
EST:     GTGCGATGATGAACATTTGGACTGCAACGATCTGTTATCTTCAATAACAG                         GTCAAAACTGTTGTTTCAATTCATCTCGGATTGACCTATTATTTGGAGTAT
genomic: GTGCGATGATGAACATTTGGACTGCAACGATCTGTTATCTTCAATAACAGgtatgcaatg ... tttcttccagGTCAAAACTGTTGTTTCAATTCATCTCGGATTGA-CTATTATTTGGAGTAT
EST: gi|91053846|gb|EB164264.1|EB164264
EST:     GTGCGATGATGAACATTTGGACTGCAACGATCTGTTATCTTCAATAACAG                         GTCAAAACTGTTGTTTCAATTCATCTCGGATTGACTATTATTTGGAGTATG
genomic: GTGCGATGATGAACATTTGGACTGCAACGATCTGTTATCTTCAATAACAGgtatgcaatg ... tttcttccagGTCAAAACTGTTGTTTCAATTCATCTCGGATTGACTATTATTTGGAGTATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcctaacttatgtgctgtgcttagtatagtataatttgcaacctttcttccagGTCAAAACTGTTGTTTCAATTCATCTCGGATTGACTATTATTTGGAGTATGAACCCCATCCGTCATCAACAAAAAATTTGCGGCATCTTTTCCAGA
  tcctaac  putative branch site (score: 1)
                                           cctttcttcc  putative PPT
                      ttagtatagtataatt  TA-rich tract