1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgcagtcatcatggcaatgaataaaaatgtcgtctaataattgatgtttctgctgatgtattgatatgtatttaattactacctgtttcctttctatcagGTACATCCCATTACTAAAGGAGACATTTATGTTCCCACAAAGCTTGGGCATTTTAGGTGGAAAACCTGGTACATCAACATACATTGCTGGGGTACAGGAT
species | Zea mays |
transcript | GRMZM2G064212_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATTCTTTTGTTAGTTCCTCTGGTTCTTGGCCTTGACAAAATTAACCCAAG GTACATCCCATTACTAAAGGAGACATTTATGTTCCCACAAAGCTTGGGCATEST: gi|71320080|gb|DR796795.1|DR796795
genomic: ATTCTTTTGTTAGTTCCTCTGGTTCTTGGCCTTGACAAAATTAACCCAAGgtaattagct ... tttctatcagGTACATCCCATTACTAAAGGAGACATTTATGTTCCCACAAAGCTTGGGCAT
EST: ATTCTTTTGTTAGTTCCTCGGGTTCTTGGCCTTGACAAAATTAACCCAAG GTACATCCCATTACTAAAGGAGACATTTATGTTCCCACAAAGCTTGGGCATEST: gi|89764485|gb|DY691273.1|DY691273
genomic: ATTCTTTTGTTAGTTCCTCTGGTTCTTGGCCTTGACAAAATTAACCCAAGgtaattagct ... tttctatcagGTACATCCCATTACTAAAGGAGACATTTATGTTCCCACAAAGCTTGGGCAT
EST: TGACAAAATTAACCCAAG GTACATCCCATTACTAAAGGAGACATTTATGTTCCCACAAAGCTTGGGCATEST: gi|71304474|gb|DR788354.1|DR788354
genomic: TGACAAAATTAACCCAAGgtaattagct ... tttctatcagGTACATCCCATTACTAAAGGAGACATTTATGTTCCCACAAAGCTTGGGCAT
EST: ATTCTTTTGTTAGTTCCTCTGGTTCTTGGCCTTGACAAAATTAACCCAAG GTACATCCCATTACTAAAGGAGACATTTATGTTCCCACAAAGCTTGGGCATEST: gi|88752742|gb|DY536883.1|DY536883
genomic: ATTCTTTTGTTAGTTCCTCTGGTTCTTGGCCTTGACAAAATTAACCCAAGgtaattagct ... tttctatcagGTACATCCCATTACTAAAGGAGACATTTATGTTCCCACAAAGCTTGGGCAT
EST: ATTCTTTTGTTAGTTCCTCTGGTTCTTGGCCTTGACAAAATTAACCCAAG GTACATCCCATTACTAAAGGAGACATTTATGTTCCCACAAAGCTTGGGCATEST: gi|60356331|gb|DN223304.1|DN223304
genomic: ATTCTTTTGTTAGTTCCTCTGGTTCTTGGCCTTGACAAAATTAACCCAAGgtaattagct ... tttctatcagGTACATCCCATTACTAAAGGAGACATTTATGTTCCCACAAAGCTTGGGCAT
EST: TTTGTTAGTTCCTCTGGTTCTTGGCCTTGACAAAATTAACCCAAG GTACATCCCATTACTAAAGGAGACATTTATGTTCCCACAAAGCTTGGGCAT
genomic: TTTGTTAGTTCCTCTGGTTCTTGGCCTTGACAAAATTAACCCAAGgtaattagct ... tttctatcagGTACATCCCATTACTAAAGGAGACATTTATGTTCCCACAAAGCTTGGGCAT
gtttctgctgatgtattgatatgtatttaattactacctgtttcctttctatcagGTACATCCCATTACTAAAGGAGACATTTATGTTCCCACAAAGCTTGGGCATTTTAGGTGGAAAACCTGGTACATCAACATACATTGCTGGGGTACAGGAT
ctacctgtttcctttc CT-rich tract
atgtattgatatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcagtcatcatggcaatgaataaaaatgtcgtctaataattgatgtttctgctgatgtattgatatgtatttaattactacctgtttcctttctatcagGTACATCCCATTACTAAAGGAGACATTTATGTTCCCACAAAGCTTGGGCATTTTAGGTGGAAAACCTGGTACATCAACATACATTGCTGGGGTACAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA