1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...catctttgttgttgttgttgttggatgtaataatctagtttcaaagtgaagcaacgaatcacagcattcattcgctaataaccacttcttttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAGTGCCGAAAAGTGCTGCCAACAGCAGTTGAGGGTGGTGAACCTTTGCCTGAGGGTCTCCTCTGGCTTC
species | Zea mays |
transcript | GRMZM2G063909_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAGGGATCATTGGAATGCTTTGGGAGACATCCCTAGTCGACCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAGTEST: gi|6526999|gb|AW216224.1|AW216224
genomic: GAGGGATCATTGGAATGCTTTGGGAGACATCCCTAGTCGACCCAGAGGAGgtaatcctgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAGT
EST: GAGGGGTCATTGGAATGCTTTGGGAAACATCCCTAGTTGACCCGGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCTGAGTGCCAAAAAGTGCTGCCAEST: gi|71303469|gb|DR787844.1|DR787844
genomic: GAGGGATCATTGGAATGCTTTGGGAGACATCCCTAGTCGACCCAGAGGAGgtaatcctgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAGTGCCGAAAAGTGCTGCCA
EST: GAGGGATCATTGGAATGCTTTGGGAGACATCCCTAGTCGACCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAGTGCCGAAAAGTGCTGCCAEST: gi|148965958|gb|EE016876.2|EE016876
genomic: GAGGGATCATTGGAATGCTTTGGGAGACATCCCTAGTCGACCCAGAGGAGgtaatcctgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAGTGCCGAAAAGTGCTGCCA
EST: GAGGGATCATTGGAATGCTTTGGGAGACATCCCTAGTCGACCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAGTGCCGAAAAGTGCTGCCAEST: gi|211161741|gb|FL193319.1|FL193319
genomic: GAGGGATCATTGGAATGCTTTGGGAGACATCCCTAGTCGACCCAGAGGAGgtaatcctgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAGTGCCGAAAAGTGCTGCCA
EST: GAGGGATCATTGGAATGCTTTGGGAGACATCCCTAGTCGACCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAGTGCCGAAAAGTGCTGCCAEST: gi|78088374|gb|DV516767.1|DV516767
genomic: GAGGGATCATTGGAATGCTTTGGGAGACATCCCTAGTCGACCCAGAGGAGgtaatcctgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAGTGCCGAAAAGTGCTGCCA
EST: GAGGGATCATTGGAATGCTTTGGGAGACATCCCTAGTCGACCCAGAGGAG GGTATTCGTTTTAGGGGCCTCTCAATTCCAGAGTGCCGAAAAGTGCTGCCA
genomic: GAGGGATCATTGGAATGCTTTGGGAGACATCCCTAGTCGACCCAGAGGAGgtaatcctgc ... ttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAGTGCCGAAAAGTGCTGCCA
gtgaagcaacgaatcacagcattcattcgctaataaccacttcttttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAGTGCCGAAAAGTGCTGCCAACAGCAGTTGAGGGTGGTGAACCTTTGCCTGAGGGTCTCCTCTGGCTTC
taataac putative branch site (score: 1)
ccacttcttttctatc CT-rich tract
ttttctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catctttgttgttgttgttgttggatgtaataatctagtttcaaagtgaagcaacgaatcacagcattcattcgctaataaccacttcttttctatccagGGTATTCGTTTTAGGGGCCTCTCAATTCCAGAGTGCCGAAAAGTGCTGCCAACAGCAGTTGAGGGTGGTGAACCTTTGCCTGAGGGTCTCCTCTGGCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC