1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtctgccttctaccttctcttgatatagtttcttagtaattctgctggctaattttgtttgattatttatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTACCATGGAGTGGCTGGAGAACTACTGCAAGAACAAGGCTGCTTGAAGCT
species | Zea mays |
transcript | GRMZM2G063851_T05 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTEST: gi|40335071|gb|CK369141.1|CK369141
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTEST: gi|84908305|gb|DW404183.1|DW404183
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTEST: gi|5922342|gb|AW055631.1|AW055631
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: ATTACACTGTCTTGTTCGGTGTTTCAANAAGCATGGGGATAGGATCTCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTEST: gi|111433800|gb|EE298053.1|EE298053
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: ATTACACTGTCTTGTTCGGGGTTTCAAGAAGCATGGGGATAGGATCTCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTEST: gi|89248619|gb|DY620405.1|DY620405
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTEST: gi|148929642|gb|EC876096.2|EC876096
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG TTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTEST: gi|76010584|gb|DT937754.1|DT937754
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTEST: gi|31363851|gb|CD448206.1|CD448206
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTEST: gi|7227830|gb|AW566471.1|AW566471
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: TCGGTGTTTCAAGAAGCATGGGGATAGGATTTCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCCCTTGAAAGGCCGAAGAGTGTTEST: gi|149100798|gb|EE186892.2|EE186892
genomic: TCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATTTCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTEST: gi|6973552|gb|AW438288.1|AW438288
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: TTACACTGTCTTGTTCGGTGTTTCAAGAAGCTATGGGGATAGGATCTCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTEST: gi|110202089|gb|EC883986.1|EC883986
genomic: TTACACTGTCTTGTTCGGTGTTTCAAGAAGC-ATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTEST: gi|71771088|gb|DR969025.1|DR969025
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTEST: gi|78021514|gb|DV489901.1|DV489901
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTEST: gi|37380261|gb|CF626924.1|CF626924
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTEST: gi|5901109|gb|AW042209.1|AW042209
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTEST: gi|241994796|gb|GR421149.1|GR421149
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: ATTACACTGTCTTGTTCGGCGTTTCAAGAAGCATGGGGATAGGATCTCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTEST: gi|110954440|gb|EE174492.1|EE174492
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATTTCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTEST: gi|18162925|gb|BM332764.1|BM332764
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: GCATGGGGATAGGATCTCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTEST: gi|148991805|gb|EE033386.2|EE033386
genomic: GCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTEST: gi|93284645|gb|EB676909.1|EB676909
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTEST: gi|37376636|gb|CF624868.1|CF624868
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG CTCATCTGGGACCGTGCCCTTGGCTTGCCACTTGAGAGGCCGAAGAGTGTTEST: gi|60359668|gb|DN226641.1|DN226641
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: GTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTEST: gi|149082973|gb|EE172210.2|EE172210
genomic: GTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTEST: gi|60395299|gb|DN228168.1|DN228168
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTEST: gi|37399560|gb|CF637110.1|CF637110
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
EST: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAG CTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
genomic: ATTACACTGTCTTGTTCGGTGTTTCAAGAAGCATGGGGATAGGATCTCAGgtctgccttc ... tatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTT
atatagtttcttagtaattctgctggctaattttgtttgattatttatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTACCATGGAGTGGCTGGAGAACTACTGCAAGAACAAGGCTGCTTGAAGCT
taattttgtttgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgccttctaccttctcttgatatagtttcttagtaattctgctggctaattttgtttgattatttatgatgcagCTCATCTGGGACCGTGCCCTTGGCCTGCCACTTGAGAGGCCGAAGAGTGTTACCATGGAGTGGCTGGAGAACTACTGCAAGAACAAGGCTGCTTGAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC