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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgctattcctctagagtctagattttgttggaaacgaaatgccaaccgatggatgacataaaatcttgtgtcctacactaaactattgaaccattgcagATAAGGAATGAGAAAGCTCGACGATACATGAACAATATGAGGAAAAAGCCTCGGGTTCCCTTTACTAAAAAGTTTCCAGGGATAG

Basic information

species Zea mays
transcript GRMZM2G062761_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G062761_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os05g50120.1 (Oryza sativa), 3'ss of exon 5
ttgctattcctctagagtctagattttgttggaaa-cgaaatgccaaccg-atggatgacataaaatcttgtgtcctacactaaactattgaacca-ttgcagATAAGGAATGAGAAAGCTCGACGATACATGAACAATATGAGGAAAAAGCCTCGGGTTCCCTTTACTAAAAAGTTTCCAGGGATAG---------------
   |||||    |  | | ||  | ||||   ||| |||  ||  ||  | |   || |   | | |  ||||   |||| | |  |||||||    ||||||||| ||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||| ||||||||||| ||||||||  | |               
--tctattttcttcca-tgtatttgttgtaaaaaaacgaggtgtaaattgtagaaataatgcatattgatgtgctttacattcatttattgaatgggttgcagATACGGAATGAGAAAGCTCGACGATACCTGAGCAACATGAGGAAAAAGCCTCGGGTTCCTTTTACTAAAAAATTTCCAGGTGTGGATCCTATGGCTCTCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accgatggatgacataaaatcttgtgtcctacactaaactattgaaccattgcagATAAGGAATGAGAAAGCTCGACGATACATGAACAATATGAGGAAAAAGCCTCGGGTTCCCTTTACTAAAAAGTTTCCAGGGATAG
                               cactaaa  putative branch site (score: 2)
             ataaaatctt  TA-rich tract