Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttccaagttttagtttttgctcacgtacctttggtgcactcagctctttttttttcccatttcggggtttaatttgtagtgtaacttgacttggatcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAG

Basic information

species Zea mays
transcript GRMZM2G062425_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G062425_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os03g21830.1 (Oryza sativa), 3'ss of exon 5
gtatgttccaagttttagtttttgctcacgtacctttggtgcactcagctctttttttttcccatttcggggtttaatttgt-agtgtaa-cttgacttggatcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAG
           || |  | | |||  ||  | ||||||    ||  ||   || | |    ||  | ||   ||| |||||| | | |   | ||||||   ||   | |||||||||||| ||||||||||| || || ||||||||||| ||||||  ||||||  | ||||| ||||||
-----------gtatgtgctattgg-cattttcctttgacttacctagtcattgtgtaagtcctatgcgtcatttgatttgtcaatatcttcatgacttaactca-atgcagTTATCCTCCAAAGGAAGCATCGAAGATTGCTGTTTCTACTGCACAACGATTTTCTAATGATATTAAAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60346456|gb|DN213429.1|DN213429
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|60350894|gb|DN217867.1|DN217867
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|60340981|gb|DN207954.1|DN207954
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         CTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAGAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|211235601|gb|FL469488.1|FL469488
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAGAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|32916032|gb|CF020844.1|CF020844
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         CTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAGAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|60400550|gb|DN233357.1|DN233357
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|18654978|gb|BM499783.1|BM499783
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         CTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAGAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|211409605|gb|FL451596.1|FL451596
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|149058791|gb|EE156812.2|EE156812
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|30087019|gb|CB885227.1|CB885227
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|4646952|gb|AI622027.1|AI622027
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|71768330|gb|DR966267.1|DR966267
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|27769705|gb|CB042895.1|CB042895
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|33091799|gb|CF051793.1|CF051793
EST:     ACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         CTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAGAAATT
genomic: ACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|60337208|gb|DN204181.1|DN204181
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         CTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAGAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|71760661|gb|DR958598.1|DR958598
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|18180255|gb|BM381465.1|BM381465
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|32934766|gb|CF039578.1|CF039578
EST:     GTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         CTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAGAAATT
genomic: GTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|91874149|gb|EB404106.1|EB404106
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTTTTCCGCACAAAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|29544033|gb|CB604413.1|CB604413
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|60347033|gb|DN214006.1|DN214006
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|12968348|gb|BG265294.1|BG265294
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         CTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAGAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|32855392|gb|CD995073.1|CD995073
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         CTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAGAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|71444605|gb|DR825655.1|DR825655
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTTTACCGCACAAAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|27576007|gb|CA998701.1|CA998701
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|20208345|gb|BQ134434.1|BQ134434
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAGAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|211448985|gb|FL452542.1|FL452542
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTYTACCGCACAAAA-TT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|76284272|gb|DV023840.1|DV023840
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|78073968|gb|DV502402.1|DV502402
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|60339297|gb|DN206270.1|DN206270
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|50322938|gb|CO518064.1|CO518064
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|88752056|gb|DY536197.1|DY536197
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTTTACCGCACAAAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|78544379|gb|DV621877.1|DV621877
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAGAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|8516517|gb|BE123242.1|BE123242
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         CTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAGAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|71775282|gb|DR973160.1|DR973160
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|32916033|gb|CF020845.1|CF020845
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         CTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAGAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|27521916|gb|CA989022.1|CA989022
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTTTACCGCACAAAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|30031764|gb|CB833615.1|CB833615
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|211432061|gb|FL422432.1|FL422432
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAGAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|50334455|gb|CO529581.1|CO529581
EST:     CTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTTTCCCGCACAAAAATT
genomic: CTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|16927502|gb|BM080571.1|BM080571
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|60339706|gb|DN206679.1|DN206679
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         CTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAGAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
EST: gi|78118087|gb|DV536474.1|DV536474
EST:     AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCG                         TTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT
genomic: AATGGCATTCAGTACATCGCATTCCCTGCTATATCTTGTGGTGTTTATCGgtatgttcca ... tcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttcccatttcggggtttaatttgtagtgtaacttgacttggatcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAG
                 tttaatttgta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgttccaagttttagtttttgctcacgtacctttggtgcactcagctctttttttttcccatttcggggtttaatttgtagtgtaacttgacttggatcttgtacagTTATCCTCCCAAGGAAGCATCAAAAATAGCTGTTTCTACCGCACAAAAATTTTCAGAGGATATCAAAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT