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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgttgttgttgttgttgttgttgttgttgttgttgttgtggtcgttacaatgaaagcactgacaatagcgtaaaactggtggttatctgattggtgcagGATCCGTCCGGTGCTCCGGTGTCCCGGGACACGGAAGCTTCGGTGCAGATAAGCAGGCTGCCTCACTGGAACAACCAGCCGGACAGCTACCTGGCGTGCC

Basic information

species Zea mays
transcript GRMZM2G062084_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G062084_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g56540.1 (Oryza sativa), 3'ss of exon 5
------------------------------------------------------------------------------ttgttgttgttgttgttgttgt-tgttgttgttgttgttgtggtcgttacaatgaaagcactgacaatagcgtaaaactggtggttatctgatt-ggtgcagGATCCGTCCGGTGCTCCGGTGTCCCGGGACACGGAAGCTTCGGTGCAGATAAGCAGGCTGCCTCACTGGAACAACCAGCCGGACAGCTACCTGGCGTGCC
                                                                               |||  ||  |     | |    | |||   | |  | |    || |  || ||||| ||   | ||  | | || |   | || | ||||||| |||||||||||| || || || ||||||||| | || | ||||||   ||||| |||||||| ||||||   ||| |||||||||||| |||||||||| || ||| 
gtacgtcatctagctcctctactactacctatgccatgctttcatccaagtgttctctgctacctcttcctccttgcaatgtcattcat-ccactatcacatcttgcattggaggatcgaatcttgtcagtgaaaaca--aataa-ggagaaatatgtggggatctctgatttggtgcagGATCCTTCTGGCGCACCGGTGTCCAGAGAGAAGGAAGCAGGGGTGCCGATAAGCAAGCTGCCAAGCTGCAACAACCAGCCGAACAGCTACCTAGCCTGCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacaatgaaagcactgacaatagcgtaaaactggtggttatctgattggtgcagGATCCGTCCGGTGCTCCGGTGTCCCGGGACACGGAAGCTTCGGTGCAGATAAGCAGGCTGCCTCACTGGAACAACCAGCCGGACAGCTACCTGGCGTGCC
                          taaaact  TA-rich tract