1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgtgaaaataacaaccacttctgtgtttgctcccgaatggagtcatatatttttataacatgttacatctgcagtttgtgtgcatggaacttacagAAAAAACCTTGACTCGATTTTGCAATTTGGGCTAAAGCGTATGGCAAGGTTACACATACATTTCTCAAGCGGCTTACCATCAGATGGAGAAGTAACCAGT
species | Zea mays |
transcript | GRMZM2G061783_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CACATCAGAGAGCCTGCTGAAGCCCATTTTGTCCCCCGACGAAGTGTCAG AAAAAACCTTGACTCGATTTTGCAATTTGGGGCTAA-GCGTAEST: gi|60357389|gb|DN224362.1|DN224362
genomic: CACATCAGAGAGCCTGCTGAAGCCCATTTTGTCCCCCGACGAAGTGTCAGgtatgtgaaa ... gaacttacagAAAAAACCTTGACTCGATTTTGCAATTTGGG-CTAAAGCGTA
EST: CTGCTGAAGCCCATTTTGTCCCCCGACGAAGTGTCAG AAAAAACCTTGACTCGATTTTGCAATTTGGGCTAAAGCGTATGGCAAGGTTEST: gi|60353651|gb|DN220624.1|DN220624
genomic: CTGCTGAAGCCCATTTTGTCCCCCGACGAAGTGTCAGgtatgtgaaa ... gaacttacagAAAAAACCTTGACTCGATTTTGCAATTTGGGCTAAAGCGTATGGCAAGGTT
EST: TTTTGTCCCCCGACGAAGTGTCAG AAAAAACCTTGACTCGATTTTGCAATTTGGGCTAAAGCGTATGGCAAGGTTEST: gi|50336497|gb|CO531623.1|CO531623
genomic: TTTTGTCCCCCGACGAAGTGTCAGgtatgtgaaa ... gaacttacagAAAAAACCTTGACTCGATTTTGCAATTTGGGCTAAAGCGTATGGCAAGGTT
EST: CACATCAGAGAGCCTGCTGAAGCCCATTTTGTCCCCCGACGAAGTGTCAG AAAAAACCTTGACTCGATTTTGCAATTTGGGCTAAAGCGTATGGCAAGGTT
genomic: CACATCAGAGAGCCTGCTGAAGCCCATTTTGTCCCCCGACGAAGTGTCAGgtatgtgaaa ... gaacttacagAAAAAACCTTGACTCGATTTTGCAATTTGGGCTAAAGCGTATGGCAAGGTT
gtcatatatttttataacatgttacatctgcagtttgtgtgcatggaacttacagAAAAAACCTTGACTCGATTTTGCAATTTGGGCTAAAGCGTATGGCAAGGTTACACATACATTTCTCAAGCGGCTTACCATCAGATGGAGAAGTAACCAGT
ttataac putative branch site (score: 42)
atatttttataacatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgaaaataacaaccacttctgtgtttgctcccgaatggagtcatatatttttataacatgttacatctgcagtttgtgtgcatggaacttacagAAAAAACCTTGACTCGATTTTGCAATTTGGGCTAAAGCGTATGGCAAGGTTACACATACATTTCTCAAGCGGCTTACCATCAGATGGAGAAGTAACCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT