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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtaacaccttcctttccctcatttaagggaaaatcaaaggagattttttcactcactgggggtaaatcatgaccaccactgattatttcatgaaatgatttttaaaatgctaaatttttgtgcagGTTCTTCTTTCTTCCGGGATGATACGAGGTTGCGCGCTCTTCGTTTCCTTGACCATTTGCTT

Basic information

species Zea mays
transcript GRMZM2G061681_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G061681_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g42950.2 (Oryza sativa), 3'ss of exon 5
gtgtgt-aacaccttcctttccctcatttaagggaaaa------tcaaaggagattttttca-----ctcactgggggtaaatcatgaccaccactgattatttcatgaaatgatttttaaaatgcta-aatttttgt---gcagGTTCTTCTTTCTTCCGGGATGATACGAGGTTGCGCGCTCTTCGTTTCCTTGACCATTTGCTT
||   | | ||| |  | || | | || |  || | ||       || |   || |||||       ||   ||   | | ||||  |     ||  ||  || ||||||||   |||| ||||| |  |  || |||     ||| ||||| ||||||||| |||||||| ||||||| |||||||||||||||||||||||||||
gtaaattatcacttatcatttctttatcttgggcataagatcttccagaatggagtttttggatgttctatttgattggagatcaccag-gttacctatacttacatgaaatt-cttttgaaatgttgcaccttctgtctgatagGCTCTTCCTTCTTCCGGAATGATACGCGGTTGCGTGCTCTTCGTTTCCTTGACCATTTGCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaccaccactgattatttcatgaaatgatttttaaaatgctaaatttttgtgcagGTTCTTCTTTCTTCCGGGATGATACGAGGTTGCGCGCTCTTCGTTTCCTTGACCATTTGCTT
                                     tgctaaa  putative branch site (score: 2)
                                            tttttgt  CT-rich tract
           attatttcatgaaatg  TA-rich tract