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...tactgtggttactatatgttcatctcttggccttgttttattttttaccaaagaaggccagtaaattgactcgttactcatgtttatcaaactgaaacagATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGATGATGATGTGAGGCTGCATCCTGGGACTATCGGAGCTCTCACAAAAGAAA
species | Zea mays |
transcript | GRMZM2G061419_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTG ATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGATEST: gi|149075471|gb|EE163995.2|EE163995
genomic: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTGgtttgtaaat ... actgaaacagATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGAT
EST: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTG ATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGATEST: gi|76913089|gb|DV165003.1|DV165003
genomic: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTGgtttgtaaat ... actgaaacagATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGAT
EST: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTG ATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGATEST: gi|74245609|gb|DT653523.1|DT653523
genomic: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTGgtttgtaaat ... actgaaacagATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGAT
EST: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTG ATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGATEST: gi|61119317|gb|DN560278.1|DN560278
genomic: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTGgtttgtaaat ... actgaaacagATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGAT
EST: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTG ATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGATEST: gi|78090711|gb|DV519085.1|DV519085
genomic: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTGgtttgtaaat ... actgaaacagATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGAT
EST: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTG ATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGATEST: gi|148972415|gb|EE023349.2|EE023349
genomic: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTGgtttgtaaat ... actgaaacagATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGAT
EST: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTG ATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGATEST: gi|71304141|gb|DR788190.1|DR788190
genomic: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTGgtttgtaaat ... actgaaacagATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGAT
EST: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTG ATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGATEST: gi|71447226|gb|DR828276.1|DR828276
genomic: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTGgtttgtaaat ... actgaaacagATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGAT
EST: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTG ATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGATEST: gi|71427209|gb|DR808259.1|DR808259
genomic: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTGgtttgtaaat ... actgaaacagATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGAT
EST: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTG ATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGATEST: gi|76020824|gb|DT947994.1|DT947994
genomic: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTGgtttgtaaat ... actgaaacagATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGAT
EST: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTG ATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGATEST: gi|149076827|gb|EE165480.2|EE165480
genomic: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTGgtttgtaaat ... actgaaacagATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGAT
EST: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTG ATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGATEST: gi|148965663|gb|EE016513.2|EE016513
genomic: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTGgtttgtaaat ... actgaaacagATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGAT
EST: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGNAAATTCACAATCAATTG ATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGATEST: gi|148969660|gb|EE020524.2|EE020524
genomic: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTGgtttgtaaat ... actgaaacagATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGAT
EST: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTG ATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGATEST: gi|76293199|gb|DV032767.1|DV032767
genomic: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTGgtttgtaaat ... actgaaacagATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGAT
EST: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTG ATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGAT
genomic: TCGTTGCTGGGTTGTCAACAACCTGTAGCCAGAAAATTCACAATCAATTGgtttgtaaat ... actgaaacagATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGAT
taccaaagaaggccagtaaattgactcgttactcatgtttatcaaactgaaacagATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGATGATGATGTGAGGCTGCATCCTGGGACTATCGGAGCTCTCACAAAAGAAA
aattgac putative branch site (score: 180)
tttatcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactgtggttactatatgttcatctcttggccttgttttattttttaccaaagaaggccagtaaattgactcgttactcatgtttatcaaactgaaacagATCGGTGTTGAAAAGATGCACAAGGATACCAAGTATGTATTGTTTCTTGATGATGATGTGAGGCTGCATCCTGGGACTATCGGAGCTCTCACAAAAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
tactgtg
- - - - - - - - -gttcatc
- - - - - - - - - - - - - - - -cttgttt
- - - - - - - - - - - - - - - - - - - - - - - - -aaagaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgttt