1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attagctccataaaatatgcattgattatatcatacagaaatatcagctgacgcgtttaattacctttctgcttatatgaatttccatcttgttttctagGGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGGAAAGGTCAGCTGATTCTGTCTCTTGAGAATGCAGCTTCCTACAGAGAAA
species | Zea mays |
transcript | GRMZM2G060999_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AACATGTGTAGATAAATGGTTAAAGGAGATTCACAG GGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGGEST: gi|110195219|gb|EC877116.1|EC877116
genomic: AACATGTGTAGATAAATGGTTAAAGGAGATTCACAGgtattcaaat ... tgttttctagGGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGG
EST: CATGAATTTCATTTAACATGTGTAGATAAATGGTTAAAGGAGATTCACAG GGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGGEST: gi|5871596|gb|AW018067.1|AW018067
genomic: CATGAATTTCATCTAACATGTGTAGATAAATGGTTAAAGGAGATTCACAGgtattcaaat ... tgttttctagGGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGG
EST: ATTTCATCTAACATGTGTAGATAAATGGTTAAAGGAGATTCACAG GGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCCCTGATTGGEST: gi|148999940|gb|EE037001.2|EE037001
genomic: ATTTCATCTAACATGTGTAGATAAATGGTTAAAGGAGATTCACAGgtattcaaat ... tgttttctagGGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGG
EST: CATGAATTTCATTTAACATGTGTAGATAAATGGTTAAAGGAGATTCACAG GGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATTTGATGCACTGATTGGEST: gi|71299450|gb|DR785731.1|DR785731
genomic: CATGAATTTCATCTAACATGTGTAGATAAATGGTTAAAGGAGATTCACAGgtattcaaat ... tgttttctagGGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGG
EST: CATGAATTTCATCTAACATGTGTAGATAAATGGTTAAAGGAGATTCACAG GGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGGEST: gi|101398514|gb|EB821130.1|EB821130
genomic: CATGAATTTCATCTAACATGTGTAGATAAATGGTTAAAGGAGATTCACAGgtattcaaat ... tgttttctagGGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGG
EST: CATGAATTTCATCTAACATGTGTAGATAAATGGTTAAAGGAGATTCACAG GGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGGEST: gi|78544416|gb|DV621914.1|DV621914
genomic: CATGAATTTCATCTAACATGTGTAGATAAATGGTTAAAGGAGATTCACAGgtattcaaat ... tgttttctagGGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGG
EST: CATGAATTTCATCTAACATGTGTAGATAAATGGCTAAAGGAGATTCACAG GGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGGEST: gi|78122498|gb|DV540882.1|DV540882
genomic: CATGAATTTCATCTAACATGTGTAGATAAATGGTTAAAGGAGATTCACAGgtattcaaat ... tgttttctagGGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGG
EST: CATGAATTTCATCTAACATGTGTAGATAAATGGTTAAAGGAGATTCACAG GGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGGEST: gi|32932120|gb|CF036932.1|CF036932
genomic: CATGAATTTCATCTAACATGTGTAGATAAATGGTTAAAGGAGATTCACAGgtattcaaat ... tgttttctagGGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGG
EST: CATGAATTTCATCTAACATGTGTAGATAAATGGCTAAAGGAGATTCACAG GGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGGEST: gi|71325678|gb|DR799524.1|DR799524
genomic: CATGAATTTCATCTAACATGTGTAGATAAATGGTTAAAGGAGATTCACAGgtattcaaat ... tgttttctagGGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGG
EST: CATGAATTTCATTTAACATGTGTAGATAAATGGTTAAAGGAGATTCACAG GGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATTTGATGCACTGATTGGEST: gi|78076337|gb|DV504771.1|DV504771
genomic: CATGAATTTCATCTAACATGTGTAGATAAATGGTTAAAGGAGATTCACAGgtattcaaat ... tgttttctagGGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGG
EST: CATGAATTTCATCTAACATGTGTAGATAAATGGTTAAAGGAGATTCACAG GGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGGEST: gi|71771687|gb|DR969624.1|DR969624
genomic: CATGAATTTCATCTAACATGTGTAGATAAATGGTTAAAGGAGATTCACAGgtattcaaat ... tgttttctagGGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGG
EST: CATGAATTTCATCTAACATGTGTAGATAAATGGTTAAAGGAGATTCACAG GGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATTTGATGCACTGATTGGEST: gi|5847602|gb|AW000681.1|AW000681
genomic: CATGAATTTCATCTAACATGTGTAGATAAATGGTTAAAGGAGATTCACAGgtattcaaat ... tgttttctagGGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGG
EST: CATGAATTTCATCTAACATGTGTAGATAAATGGTTAAAGGAGATTCACAG GGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGGEST: gi|101398512|gb|EB821129.1|EB821129
genomic: CATGAATTTCATCTAACATGTGTAGATAAATGGTTAAAGGAGATTCACAGgtattcaaat ... tgttttctagGGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGG
EST: CATGAATTTCATTTAACATGTGTAGATAAATGGTTAAAGGAGATTCACAG GGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGGEST: gi|60400728|gb|DN233535.1|DN233535
genomic: CATGAATTTCATCTAACATGTGTAGATAAATGGTTAAAGGAGATTCACAGgtattcaaat ... tgttttctagGGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGG
EST: CATGAATTTCATCTAACATGTGTAGATAAATGGTTAAAGGAGATTCACAG GGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGGEST: gi|5525666|gb|AI861559.1|AI861559
genomic: CATGAATTTCATCTAACATGTGTAGATAAATGGTTAAAGGAGATTCACAGgtattcaaat ... tgttttctagGGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGG
EST: CATGAATTTCATCTAACATGTGTAGATAAATGGTTAAAGGAGATTCACAG GGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGGEST: gi|20315421|gb|BQ169270.1|BQ169270
genomic: CATGAATTTCATCTAACATGTGTAGATAAATGGTTAAAGGAGATTCACAGgtattcaaat ... tgttttctagGGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGG
EST: CATGAATTTCATCTAACATGTGTAGATAAATGGCTAAAGGAGATTCACAG GGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGG
genomic: CATGAATTTCATCTAACATGTGTAGATAAATGGTTAAAGGAGATTCACAGgtattcaaat ... tgttttctagGGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGG
agctgacgcgtttaattacctttctgcttatatgaatttccatcttgttttctagGGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGGAAAGGTCAGCTGATTCTGTCTCTTGAGAATGCAGCTTCCTACAGAGAAA
tttccatcttgttttc CT-rich tract
ttatatgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attagctccataaaatatgcattgattatatcatacagaaatatcagctgacgcgtttaattacctttctgcttatatgaatttccatcttgttttctagGGTTTGTCCACTTTGTCGTGGCGATGTCTGCAGATCTGATGCACTGATTGGAAAGGTCAGCTGATTCTGTCTCTTGAGAATGCAGCTTCCTACAGAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- -agctcca
- - - - - - - - atgcatt
- - - - - - - - - - - - - - - -catacag
- - - - - - - - - - - - - - - - - - - - - - - gctgacg