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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatcctcatatcctcgatgttaatgaacataaattaatttaagggtgcctaaatgtgagtaacttatgtgattaaatcaccaatcttattatttaacagACTGCTGTCAGTTATGCTTTGGGGGTTGGTTTCAG

Basic information

species Zea mays
transcript GRMZM2G060842_T01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76280845|gb|DV020413.1|DV020413
EST:     GAACTGGAGCAGCATGTAGTTTATATTGTCTCCTGGTTTTCTCTCTGGAG                         ACTGCTGTCAGTTATGCTTTGGGGGTTGGTTTCAG
genomic: GAACTGGAGCAGCATGTAGTTTATATTGTCTCCTGGTTTTCTCTCTGGAGgtacatcctc ... tatttaacagACTGCTGTCAGTTATGCTTTGGGGGTTGGTTTCAG
EST: gi|50327397|gb|CO522523.1|CO522523
EST:     GAACTGGAGCAGCATGTAGTTTATATTGTCTCCTGGTTTTCTCTCTGGAG                         ACTGCTGTCAGTTATGCTTTGGGGGTTGGTTTCAG
genomic: GAACTGGAGCAGCATGTAGTTTATATTGTCTCCTGGTTTTCTCTCTGGAGgtacatcctc ... tatttaacagACTGCTGTCAGTTATGCTTTGGGGGTTGGTTTCAG
EST: gi|76280844|gb|DV020412.1|DV020412
EST:     GAACTGGAGCAGCATGTAGTTTATATTGTCTCCTGGTTTTCTCTCTGGAG                         ACTGCTGTCAGTTATGCTTTGGGGGTTGGTTTCAG
genomic: GAACTGGAGCAGCATGTAGTTTATATTGTCTCCTGGTTTTCTCTCTGGAGgtacatcctc ... tatttaacagACTGCTGTCAGTTATGCTTTGGGGGTTGGTTTCAG
EST: gi|91875732|gb|EB405689.1|EB405689
EST:     GAACTGGAGCAGCATGTAGTTTATATTGTCTCCTGGTTTTCTCTCTGGAG                         ACTGCTGTCAGTTATGCTTTGGGGGTTGGTTTCAG
genomic: GAACTGGAGCAGCATGTAGTTTATATTGTCTCCTGGTTTTCTCTCTGGAGgtacatcctc ... tatttaacagACTGCTGTCAGTTATGCTTTGGGGGTTGGTTTCAG
EST: gi|76912690|gb|DV164849.1|DV164849
EST:     GAACTGGAGCAGCATGTAGTTTATATTGTCTCCTGGTTTTCTCTCTGGAG                         ACTGCTGTCAGTTATGCTTTGGGGGTTGGTTTCAG
genomic: GAACTGGAGCAGCATGTAGTTTATATTGTCTCCTGGTTTTCTCTCTGGAGgtacatcctc ... tatttaacagACTGCTGTCAGTTATGCTTTGGGGGTTGGTTTCAG
EST: gi|101386086|gb|EB815086.1|EB815086
EST:     GAACTGGAGCAGCATGTAGTTTATATTGTCTCCTGGTTTTCTCTCTGGAG                         ACTGCTGTCAGTTATGCTTTGGGGGTTGGTTTCAG
genomic: GAACTGGAGCAGCATGTAGTTTATATTGTCTCCTGGTTTTCTCTCTGGAGgtacatcctc ... tatttaacagACTGCTGTCAGTTATGCTTTGGGGGTTGGTTTCAG
EST: gi|50323043|gb|CO518169.1|CO518169
EST:     GAACTGGAGCAGCATGTAGTTTATATTGTCTCCTGGTTTTCTCTCTGGAG                         ACTGCTGTCAGTTATGCTTTGGGGGCTGGTTTCAG
genomic: GAACTGGAGCAGCATGTAGTTTATATTGTCTCCTGGTTTTCTCTCTGGAGgtacatcctc ... tatttaacagACTGCTGTCAGTTATGCTTTGGGGGTTGGTTTCAG
EST: gi|50326968|gb|CO522094.1|CO522094
EST:     GAACTGGAGCAGCATGTAGTTTATATTGTCTCCTGGTTTTCTCTCTGGAG                         ACTGCTGTCAGTTATGCTTTGGGGGTTGGTTTCAG
genomic: GAACTGGAGCAGCATGTAGTTTATATTGTCTCCTGGTTTTCTCTCTGGAGgtacatcctc ... tatttaacagACTGCTGTCAGTTATGCTTTGGGGGTTGGTTTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgcctaaatgtgagtaacttatgtgattaaatcaccaatcttattatttaacagACTGCTGTCAGTTATGCTTTGGGGGTTGGTTTCAG
            gagtaac  putative branch site (score: 2)
                                       tcttatt  putative PPT
                                     aatcttattatttaac  TA-rich tract