Sequence
atgc intronic sequence ATGC exonic sequence...agacctgctagggcatgccttgaaaacaagacaattataaagccatattttggaaatttaaatgttttgtctacattatactaatgaggaaaaattccagGTTCTTTTGGTACTGTGCACCGTGCGGATTGGAATGGTTCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G059671_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g32610.3 (Oryza sativa), 3'ss of exon 7
agacctgctagggcatgccttgaaaacaag---acaattataaagccatat-tttggaaatttaaatgttttgtctacattatactaatgaggaaaaattccagGTTCTTTTGGTACTGTGCACCGTGCGGATTGGAATGGTTCG
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---tccgtgacctcacattgtgaaaattaatgaatgatcatgaagctgcctatttccagattttgatatttt-tgtagtgtgcactaattgagaaaaatgacagGCTCATTTGGAACCGTGCACCGTGCGGATTGGAATGGCTCG
upper sequence: GRMZM2G059671_T01 (Zea mays), 3'ss of exon 5
lower sequence: Vv08s0007g03910.t01 (Vitis vinifera), 3'ss of exon 6
----agacctgctagggc--atgccttgaaaacaagacaattataaagccatattttggaaatttaaatgttttgtctacattatactaatgaggaaaaattccagGTTCTTTTGGTACTGTGCACCGTGCGGATTGGAATGGTTCG
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ttcaagtcccaatggggacaaaagtttacctataaaataataatagtaata-attttgtaggattttgttcttaaactgaattgtcttggtgc-----atttccagGTTCTTTTGGGACTGTTCATCGTGCTGATTGGAATGGATCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211082601|gb|FL182313.1|FL182313EST: CTTGATTATCCCATGGAGTGAGCTTGTTCTGAAAGAGAAAATTGGTGCAG GTTCTTTTGGTACTGTGCACCGTGCGGATTGGAATGGTTCG
genomic: CTTGATTATCCCATGGAGTGAGCTTGTTCTGAAAGAGAAAATTGGTGCAGgtgtgtttcc ... aaaattccagGTTCTTTTGGTACTGTGCACCGTGCGGATTGGAATGGTTCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattttggaaatttaaatgttttgtctacattatactaatgaggaaaaattccagGTTCTTTTGGTACTGTGCACCGTGCGGATTGGAATGGTTCG
tactaat putative branch site (score: 1)
aaatttaaatgttttg TA-rich tract