Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agagggagtactgcttgtaaattaattagctggatggcttgggtttcctttccttttccatgtttgtggagtcttgaccaataatccgtctatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACTACAAGTACAATGACGAGAACACCGTCTCCTTTGTGACCCTGAACAAGGT

Basic information

species Zea mays
transcript GRMZM2G059580_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G059580_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os06g37440.1 (Oryza sativa), 3'ss of exon 7
--agagggagtactgcttgtaaattaattagctggatggcttgggtttcctttccttttccatgtttgtggagtcttgaccaataatccgtctatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACTACAAGTACAATGACGAGAACACCGTCTCCTTTGTGACCCTGAACAAGGT
      |    | |  | | ||  || ||||  | |||   |   |||  |    |||    | ||||      |     || ||   ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| || ||||||||  ||||||||||
cttcttgttacaattttagcaatatatttag--gcatgaacttaatttattccattttcttgtttttgaattaacagagacattatcacgtctatttttcagGTTTCTGGGACATGTATGACCCAGAGGGTTACTCTCTGTGGTTCTGTGACTACAAGTACAACGATGAGAACACCGTATCGTTTGTGACGATGAACAAGGT

upper sequence: GRMZM2G059580_T03 (Zea mays), 3'ss of exon 5
lower sequence: AT1G09640.1 (Arabidopsis thaliana), 3'ss of exon 7
---agagggagta-ctgcttgta---aattaattagctg-gatggcttgggtttcctttcctttt----ccatgtttgtggagtcttgaccaataatccgtctatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACTACAAGTACAATGACGAGAACACCGTCTCCTTTGTGACCCTGAACAAGGT
    | ||   || || | | ||   | ||  | ||||  | |  |  ||  ||  ||  || ||     ||  | | |    || || | |||| |  | ||    | |||| |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| || |||||||  || || ||||| || || ||||||||
gtgtgtggtgatatcttcctctacctagtttttcagctttgctatcagggaattatttagctattggaatcaattgttttttatcatgtctaatattgtggctcaaatgcagGATTCTGGGACATGTATGACCCAGAGGGATACTCACTATGGTTCTGTGACTACAAGTACAACGATGAGAACATGGTGTCATTTGTCACGCTCAACAAGGT

upper sequence: GRMZM2G059580_T03 (Zea mays), 3'ss of exon 5
lower sequence: AT1G57720.1 (Arabidopsis thaliana), 3'ss of exon 7
--agagggagtactgcttgtaaattaattagc-tggatggcttgggtttcctt--tccttttccatgtttgtggagtcttgaccaataatccgtctatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACTACAAGTACAATGACGAGAACACCGTCTCCTTTGTGACCCTGAACAAGGT
  |||||| |||||   | |   |||     | || |||||   |  |       | | ||    |         | |||||       |   |||   || |||| |||||||||||||||||||| ||||| ||||| || |||||||||||||| |||||||| || |||||||  ||||||||||| || || ||||||||
ttagaggg-gtactcactatggtttatgggacatgtatggcccagagtctgaaagtacattctattaagctcaatgccttgaatg----tttttcttcattgcagGATTCTGGGACATGTATGACCCGGAGGGGTACTCACTATGGTTCTGTGACTATAAGTACAACGATGAGAACATGGTCTCCTTTGTTACACTCAACAAGGT

upper sequence: GRMZM2G059580_T03 (Zea mays), 3'ss of exon 5
lower sequence: PP1S172_22V6.1 (Physcomitrella patens), 3'ss of exon 5
agagggagtactgctt-gtaaattaattagctggatggcttgggtttcctttccttttccatgtttgtggag----tcttgaccaataatccgtct--------------------atgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACTACAAGTACAATGACGAGAACACCGTCTCCTTTGTGACCCTGAACAAGGT
 |   |  | ||  |  | | || | |||  |    | ||  |  |     |      ||||| || |||||    ||||||||        ||                      || |  |||| |||||||| ||||  ||  | ||||| |  ||  ||||||||||||| |||||||||||||| ||||||   ||| | || |||||| |||| |||||
-gtacgtcttctaatgagcatatgatttaatttagagcctcagtctgatactgagcacccatgcttatggagaatgtcttgaccctcggcttgtgctaacgtggtggacgggttgaatatgccagGATTCTGGGAAATGTTCGATGCTGAGGGTTGGTCATTGTGGTTCTGTGATTACAAGTACAATGATGAGAACCAAGTCACTTTCGTGACCATGAATAAGGT

upper sequence: GRMZM2G059580_T03 (Zea mays), 3'ss of exon 5
lower sequence: PP1S33_218V6.1 (Physcomitrella patens), 3'ss of exon 6
agagggagtactgcttgtaaattaattagctggatggcttgggt-ttcctttccttttccatgtttgtggagtcttgaccaa--taatccg-----tctatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACTACAAGTACAATGACGAGAACACCGTCTCCTTTGTGACCCTGAACAAGGT
       | |||  ||    |||  |   ||| |  |   | || || || || | |  |     | ||| |     |   |  ||||  |     | |||||  |||| |||||||| ||||  ||| | || || |||||| ||||||||||||| |||||||||||||||||||||   ||  ||||||||||  |||| || ||
-------gcactttttagtcattc-tagtctgcagagtcagagtgtttctctcatgtctcggacgtttggggctgatagtgagctaatttggtggttgtatgtggcagGATTCTGGGAAATGTTCGACGCTGAAGGTTACTCTTTGTGGTTCTGTGATTACAAGTACAATGACGAGAACCAAGTAACCTTTGTGACTATGAATAAAGT

upper sequence: GRMZM2G059580_T03 (Zea mays), 3'ss of exon 5
lower sequence: EFJ14564 (Selaginella moellendorffii), 3'ss of exon 6
agagggagtactgcttgtaaattaattagctggatggcttgggtttcctttccttttccatgtttgtggagtcttgaccaataatccgtctatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACTACAAGTACAATGACGAGAACACCGTCTCCTTTGTGACCCTGAACAAGGT
                               | |    | | |||||| ||  |          ||  || | |||| |   ||||        || |||| |||||||| ||||||||||| ||||| ||||| ||||||||||| |||||||||||||| || |||||||| ||  | || |||||  ||||||||||
-------------------------------gtacaagtggtgtttccattgatcgcttgaaaatgctga-ttttgatcccaaatct-------ttgcagGATTCTGGGAGATGTATGACCCCGAGGGATACTCCCTGTGGTTCTGCGACTACAAGTACAACGATGAGAACACGGTGCCTTTCGTGACGATGAACAAGGT

upper sequence: GRMZM2G059580_T03 (Zea mays), 3'ss of exon 5
lower sequence: EFJ26267 (Selaginella moellendorffii), 3'ss of exon 5
agagggagtactgcttgtaaattaattagctggatggcttgggtttcctttccttttccatgtttgtggagtcttgaccaataatccgtctatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACTACAAGTACAATGACGAGAACACCGTCTCCTTTGTGACCCTGAACAAGGT
                                    |     ||    ||||| ||     | |||   | |  |||    | |||  |     || |||| |||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||| || |||||||| ||  | || |||||  ||||||||||
------------------------------------gtacaagtggtgtttccattgat-cgcttg-aaaatgctgattc-tgatctcttccc-ttgcagGATTCTGGGACATGTATGACCCCGAGGGATACTCCCTGTGGTTCTGCGACTACAAGTACAACGATGAGAACACGGTGCCTTTCGTGACGATGAACAAGGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24766423|gb|CA401577.1|CA401577
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|211087111|gb|FL477193.1|FL477193
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|24768244|gb|CA403373.1|CA403373
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|60347460|gb|DN214433.1|DN214433
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|78544103|gb|DV621601.1|DV621601
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|4388053|gb|AI491225.1|AI491225
EST:     GAGGCTATATTCAAACNCAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|60339326|gb|DN206299.1|DN206299
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|211318091|gb|FL095913.1|FL095913
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|24765214|gb|CA400373.1|CA400373
EST:     AAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTCTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: AAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|6445527|gb|AW179445.1|AW179445
EST:     GAGGCTATACTCAAACNCAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|32857621|gb|CD997302.1|CD997302
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|6563862|gb|AW231484.1|AW231484
EST:     TCCGGGAGGTTGCCATCAAAG                         GTTTTTGGGCCATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: TCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|60401431|gb|DN234238.1|DN234238
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|211087112|gb|FL477194.1|FL477194
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|31357368|gb|CD441725.1|CD441725
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|5895574|gb|AW036820.1|AW036820
EST:     CCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: CCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|5762173|gb|AI967221.1|AI967221
EST:     CCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: CCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|211314052|gb|FL095887.1|FL095887
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|37383675|gb|CF628862.1|CF628862
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|211318098|gb|FL095920.1|FL095920
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|37397646|gb|CF636128.1|CF636128
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|31352473|gb|CD436830.1|CD436830
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|67016605|gb|CO445354.1|CO445354
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|31358797|gb|CD443154.1|CD443154
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|40337134|gb|CK371204.1|CK371204
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|24764639|gb|CA399803.1|CA399803
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|24764790|gb|CA399952.1|CA399952
EST:     GGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|60398274|gb|DN231090.1|DN231090
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|211398998|gb|FL095934.1|FL095934
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|31352931|gb|CD437288.1|CD437288
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|4837515|gb|AI670605.1|AI670605
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|19769423|gb|BQ034144.1|BQ034144
EST:     TTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: TTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|32856180|gb|CD995861.1|CD995861
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|31360435|gb|CD444792.1|CD444792
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|60395916|gb|DN228786.1|DN228786
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|14245097|gb|BG873679.1|BG873679
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|60353522|gb|DN220495.1|DN220495
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|7135582|gb|AW498159.1|AW498159
EST:     GGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|60395459|gb|DN228329.1|DN228329
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|14204257|gb|BG837934.1|BG837934
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|31350221|gb|CD434578.1|CD434578
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|211399000|gb|FL095936.1|FL095936
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|60395357|gb|DN228226.1|DN228226
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|7135249|gb|AW497991.1|AW497991
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
EST: gi|33093681|gb|CF053675.1|CF053675
EST:     GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAG                         GTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT
genomic: GAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtttgc ... tatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctttccttttccatgtttgtggagtcttgaccaataatccgtctatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACTACAAGTACAATGACGAGAACACCGTCTCCTTTGTGACCCTGAACAAGGT
                          tcttgac  putative branch site (score: 3)
                                       tccgtct  putative PPT
                                  aataat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agagggagtactgcttgtaaattaattagctggatggcttgggtttcctttccttttccatgtttgtggagtcttgaccaataatccgtctatgtttcagGTTTCTGGGACATGTATGACCCAGAGGGCTACTCTCTGTGGTTCTGTGACTACAAGTACAATGACGAGAACACCGTCTCCTTTGTGACCCTGAACAAGGT

- - - -gtactgc
- - - - - - - - - - - - - - -ctggatg