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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgacatagttttctataaaatattgaactgtagaattcacacttaaaattctatatgacgttaatttgattacatttgcacagGATGCTAGGAAACGTTTTGACAAGGCTACCCTTCTTTATGACCAG

Basic information

species Zea mays
transcript GRMZM2G059225_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G059225_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os09g33600.1 (Oryza sativa), 3'ss of exon 5
gtattgacatagttttctataaaatattgaactgtagaattcacacttaaaattctatatgacgtt---aatttgattacatttgcacagGATGCTAGGAAACGTTTTGACAAGGCTACCCTTCTTTATGACCAG
||| || |||| | |||||| ||           | | ||  | | ||  |  |  |||  | |||   | ||||||    ||||   ||||||| ||||| |||||||||||||||| |||||| |||||||||
gtactggcataatcttctattaa---------cattggataaatatttggatctgcatacaatgttttaactttgatattgtttgtttagGATGCCAGGAAGCGTTTTGACAAGGCTAGCCTTCTCTATGACCAG

upper sequence: GRMZM2G059225_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA08G28890.2 (Glycine max), 3'ss of exon 5
-----------gtattgacatagttttctataaaatattgaa----ctgtag--aattcacacttaaaattctatatgacgttaatttgattacatttgcacagGATGCTAGGAAACGTTTTGACAAGGCTACCCTTCTTTATGACCAG
           | || |     |||| || |  || ||| ||    ||||    |||| |  |    | ||   | || | | |       |   ||    ||||| ||  ||||||| ||||||||||||| |||| |||||||||||
cctcataacaaggatagttgatgtttact-tccaacattaaaatttctgtgagcaatttatgcacttagtt---tctgtcctaagggatcctctcttaatgcagGAAGCACGGAAACGCTTTGACAAGGCTAGCCTTATTTATGACCAG

upper sequence: GRMZM2G059225_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA18G51810.1 (Glycine max), 3'ss of exon 5
-----------gtattgacatagttttctataaaatattgaa----ctgtag--aattcacacttaaaattctatatgacgttaatttgattacatttgcacagGATGCTAGGAAACGTTTTGACAAGGCTACCCTTCTTTATGACCAG
           | || |     |||| || |  || ||| ||    ||||    |||| |  |    | ||   |||| | | |       |   ||    ||||| ||  ||||||| ||||||||||||| |||| |||||||||||
cctaataatgaggatagttgatgtttact-tccaacattaaaatttctgtgagcaatttatgcacttagtt---tatgtcttaagggatcctctcttaatgcagGAAGCACGGAAACGCTTTGACAAGGCTAGCCTTATTTATGACCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtagaattcacacttaaaattctatatgacgttaatttgattacatttgcacagGATGCTAGGAAACGTTTTGACAAGGCTACCCTTCTTTATGACCAG
                                ttaatttgattacatt  TA-rich tract