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gtacatagctgaatgtagggattacatgttctgttgatgataatttgtagtgtgctagatcaagaatgtggttgtgtgtttttttggattcagGTCTTTCCTCTTAAAGCAGAGCTGCTGAAACCTCAAGCAGAAATGGAGAGATTTATAACGGATTTGATAAAGAAA
species | Zea mays |
transcript | GRMZM2G059039_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCAAGGATCAGAGATTCGTGAGAAGATTTATT-GTTTTCTTCGAGACAAG GTCTTTCCTCTTAAAGCAGAGCTGCTGNAACCTCA-GCAGAAATGGAGAGAEST: gi|148969036|gb|EE019749.2|EE019749
genomic: GCAAGGATCAGAGATTCGTGAGAAGATT-ATTTGTTTTCTTCGAGACAAGgtacatagct ... ttggattcagGTCTTTCCTCTTAAAGCAGAGCTGCTGAAACCTCAAGCAGAAATGGAGAGA
EST: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAG GTCTTTCCTCTTAAAGCAGAGCTGCTGAAACCTCAAGCAGAAATGGAGAGAEST: gi|71766575|gb|DR964512.1|DR964512
genomic: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAGgtacatagct ... ttggattcagGTCTTTCCTCTTAAAGCAGAGCTGCTGAAACCTCAAGCAGAAATGGAGAGA
EST: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAG GTCTTTCCTCTTAAAGCAGAGCTGCTGAAACCTCAAGCAGAAATGGAGAGAEST: gi|60338080|gb|DN205053.1|DN205053
genomic: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAGgtacatagct ... ttggattcagGTCTTTCCTCTTAAAGCAGAGCTGCTGAAACCTCAAGCAGAAATGGAGAGA
EST: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAG GTCTTTCCTCTTAAAGCAGAGCTGCTGAAACCTCAAGCAGAAATGGAGAGAEST: gi|211433492|gb|FL365020.1|FL365020
genomic: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAGgtacatagct ... ttggattcagGTCTTTCCTCTTAAAGCAGAGCTGCTGAAACCTCAAGCAGAAATGGAGAGA
EST: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAG GTCTTTCCTCTTAAAGCAGAGCTGCTGAAACCCTCA-GCAGAAATGGEST: gi|148943964|gb|EC889044.2|EC889044
genomic: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAGgtacatagct ... ttggattcagGTCTTTCCTCTTAAAGCAGAGCTGCTGAAACC-TCAAGCAGAAATGG
EST: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAG GTCTTTCCTCTTAAAGCAGAGCTGCTGAAACCTCAAGCAGAAATGGAGAGAEST: gi|211314239|gb|FL336753.1|FL336753
genomic: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAGgtacatagct ... ttggattcagGTCTTTCCTCTTAAAGCAGAGCTGCTGAAACCTCAAGCAGAAATGGAGAGA
EST: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAG GTCTTTCCTCTTCAAGCAGAGCTGCTGAAACCTCAAGCAGAAATGGAGAGAEST: gi|76014976|gb|DT942146.1|DT942146
genomic: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAGgtacatagct ... ttggattcagGTCTTTCCTCTTAAAGCAGAGCTGCTGAAACCTCAAGCAGAAATGGAGAGA
EST: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAG GTCTTTCCTCTTAAAGCAGAGCTGCTGAAACCTCAAGCAGAAATGGAGAGAEST: gi|32164953|gb|CD670271.1|CD670271
genomic: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAGgtacatagct ... ttggattcagGTCTTTCCTCTTAAAGCAGAGCTGCTGAAACCTCAAGCAGAAATGGAGAGA
EST: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAG GTCTTTCCTCTTAAAGCAGAGCTGCTGAAACCTCAAGCAGAAATGGAGAGAEST: gi|211306674|gb|FL363564.1|FL363564
genomic: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAGgtacatagct ... ttggattcagGTCTTTCCTCTTAAAGCAGAGCTGCTGAAACCTCAAGCAGAAATGGAGAGA
EST: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAG GTCTTTCCTCTTAAAGCAGAGCTGCTGAAACCTCAAGCAGAAATGGAGAGAEST: gi|108824166|gb|EC278174.1|EC278174
genomic: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAGgtacatagct ... ttggattcagGTCTTTCCTCTTAAAGCAGAGCTGCTGAAACCTCAAGCAGAAATGGAGAGA
EST: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAG GTCTTTCCTCTTAAAGCAGAGCTGCTGGAAACCTCAAGCAGAAATGGAGAGEST: gi|31356580|gb|CD440937.1|CD440937
genomic: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAGgtacatagct ... ttggattcagGTCTTTCCTCTTAAAGCAGAGCTGCTG-AAACCTCAAGCAGAAATGGAGAG
EST: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAG GTCTTTCCTCTTAAAGCAGAGCTGCTGAAACCTCAAGCAGAAATGGAGAGAEST: gi|211050490|gb|FL366022.1|FL366022
genomic: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAGgtacatagct ... ttggattcagGTCTTTCCTCTTAAAGCAGAGCTGCTGAAACCTCAAGCAGAAATGGAGAGA
EST: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAG GTCTTTCCTCTTAAAGCAGAGCTGCTGAEST: gi|89761569|gb|DY689527.1|DY689527
genomic: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAGgtacatagct ... ttggattcagGTCTTTCCTCTTAAAGCAGAGCTGCTGA
EST: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAG GTCTTTCCTCTTAAAGCAGAGCTGCTGAAACCTCAAGCAGAAATGGAGAGAEST: gi|149105666|gb|EE291222.2|EE291222
genomic: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAGgtacatagct ... ttggattcagGTCTTTCCTCTTAAAGCAGAGCTGCTGAAACCTCAAGCAGAAATGGAGAGA
EST: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAG GTCTTTCCTCTTAAAGCAGAGCTGCTGAAACCTCAAGCAGAAATGGAGAGAEST: gi|50326790|gb|CO521916.1|CO521916
genomic: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAGgtacatagct ... ttggattcagGTCTTTCCTCTTAAAGCAGAGCTGCTGAAACCTCAAGCAGAAATGGAGAGA
EST: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAG GTCTTTCCTCTTAAAGCAGAGCTGCTNGAA-CCTCAAGCAGAAATGGAGAGEST: gi|31358588|gb|CD442945.1|CD442945
genomic: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAGgtacatagct ... ttggattcagGTCTTTCCTCTTAAAGCAGAGCTGCT-GAAACCTCAAGCAGAAATGGAGAG
EST: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAG GTCTTTCCTCTTAAAGCAGAGCTGCTGAAACCTCAAGCAGAAATGGAGAGA
genomic: AGCAAGGATCAGAGATTCGTGAGAAGATTATTTGTTTTCTTCGAGACAAGgtacatagct ... ttggattcagGTCTTTCCTCTTAAAGCAGAGCTGCTGAAACCTCAAGCAGAAATGGAGAGA
gataatttgtagtgtgctagatcaagaatgtggttgtgtgtttttttggattcagGTCTTTCCTCTTAAAGCAGAGCTGCTGAAACCTCAAGCAGAAATGGAGAGATTTATAACGGATTTGATAAAGAAA
tgttttttt CT-rich tract
tgttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatagctgaatgtagggattacatgttctgttgatgataatttgtagtgtgctagatcaagaatgtggttgtgtgtttttttggattcagGTCTTTCCTCTTAAAGCAGAGCTGCTGAAACCTCAAGCAGAAATGGAGAGATTTATAACGGATTTGATAAAGAAA
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