1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttagtgcttgaattctttatactagggatcacatagttgtatgaaaccatcgtatggtcttacaccattagaaccgtgtaaccatgaaatattattcttggtgctctagGTAATTAATACAGAGTGGGGGAGCTTCAAATCCAACAAACTTCCTCTTTCAGAATATGACAAAGCCATGGACTTTGAAAGTTTGAACCCTGGAGAGCAG
species | Zea mays |
transcript | GRMZM2G058745_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAATGCAATTCCTAAATGGACTGGGTTACTGCCTAAATCTGGAAACATG GTAATTAATACAGAGTGGGGGAGCTTCAAATCCAACAAACTTCCTCTTTCAEST: gi|149104506|gb|EE289955.2|EE289955
genomic: CAAATGCAATTCCTAAATGGACTGGGTTACTGCCTAAATCTGGAAAGATGgttagtgctt ... ggtgctctagGTAATTAATACAGAGTGGGGGAGCTTCAAATCCAACAAACTTCCTCTTTCA
EST: CAAATGCAATTCCTAAATGGACTGGGTTACTGCCTAAATCTGAAAAGATG GTAATTAATACAGAGTGGGGGAGCTTCAAATCCAACAAACTTCCTCTTTCEST: gi|71772829|gb|DR970754.1|DR970754
genomic: CAAATGCAATTCCTAAATGGACTGGGTTACTGCCTAAATCTGGAAAGATGgttagtgctt ... ggtgctctagGTAATTAATACAGAGTGGGGGAGCTTCAAATCCAACAAACTTCCTCTTTC
EST: CAAATGCAATTCCTAAATGGACTGGGTTACTGCCTAAATCTGGGAAGATG GTAATTAATACAGAGTGGGGGAGCTTCAAATCCAACAAACTTCCTCTTTCAEST: gi|116825360|gb|EC869084.1|EC869084
genomic: CAAATGCAATTCCTAAATGGACTGGGTTACTGCCTAAATCTGGAAAGATGgttagtgctt ... ggtgctctagGTAATTAATACAGAGTGGGGGAGCTTCAAATCCAACAAACTTCCTCTTTCA
EST: C-AATGC-ATTCCTAAATGGACTGGGTTACTGCCTAAATCTGGAAAGATG GTAATTAATACAGAGTGGGGGAGCTTCAAATCCAACAAACTTCCTCTTTCAEST: gi|32943726|gb|CF048545.1|CF048545
genomic: CAAATGCAATTCCTAAATGGACTGGGTTACTGCCTAAATCTGGAAAGATGgttagtgctt ... ggtgctctagGTAATTAATACAGAGTGGGGGAGCTTCAAATCCAACAAACTTCCTCTTTCA
EST: GGACTGGGTTACTGCCTAAATCTGGAAAGATG GTAATTAATACAGAGTGGGGGAGCTTCAAATCCAACAAACTTCCTCTTTCA
genomic: GGACTGGGTTACTGCCTAAATCTGGAAAGATGgttagtgctt ... ggtgctctagGTAATTAATACAGAGTGGGGGAGCTTCAAATCCAACAAACTTCCTCTTTCA
tggtcttacaccattagaaccgtgtaaccatgaaatattattcttggtgctctagGTAATTAATACAGAGTGGGGGAGCTTCAAATCCAACAAACTTCCTCTTTCAGAATATGACAAAGCCATGGACTTTGAAAGTTTGAACCCTGGAGAGCAG
gtgtaac putative branch site (score: 501)
atgaaatattattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgcttgaattctttatactagggatcacatagttgtatgaaaccatcgtatggtcttacaccattagaaccgtgtaaccatgaaatattattcttggtgctctagGTAATTAATACAGAGTGGGGGAGCTTCAAATCCAACAAACTTCCTCTTTCAGAATATGACAAAGCCATGGACTTTGAAAGTTTGAACCCTGGAGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG