1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cgcatcatcatatctttaaagtatatctcttagtgtgaatgcattttttccttcactgcaaatgtatcttacttctccttcgccgtggttacacatgcagCCATGCCAGATTTTGCCCAAGTATACAACTTCCTGGGAAGCATATTTGATCCGGATACAAGTGGGCATTTGCAGAGGTTAAAAGCGATGGATCCAGTTGA
species | Zea mays |
transcript | GRMZM2G057408_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAAGCAGTCGAGCAAGAAAATATGGTTCCACCACTCCGTG CCATGCCAGATTTTGCCCAAGTATACAACTTCCTGGGAAGCATATTTGATCEST: gi|78118281|gb|DV536668.1|DV536668
genomic: GAAGCAGTCGAGCAAGAAAATATGGTTCCACCACTCCGTGgtgagcactt ... acacatgcagCCATGCCAGATTTTGCCCAAGTATACAACTTCCTGGGAAGCATATTTGATC
EST: GCCAACTTCTGAAGCAGTCGAGCAAGAAAATATGGTTCCACCACTCCGTG CCATGCCAGATTTTGCCCAAGTATACAACTTCCTGGGAAGCATATTTGATCEST: gi|91876492|gb|EB406449.1|EB406449
genomic: GCCAACTTCTGAAGCAGTCGAGCAAGAAAATATGGTTCCACCACTCCGTGgtgagcactt ... acacatgcagCCATGCCAGATTTTGCCCAAGTATACAACTTCCTGGGAAGCATATTTGATC
EST: GCCAACTTCTGAAGCAGTCGAGCAAGAAAATATGGTTCCACCACTCCCTG CCATGCCAGATTTEST: gi|60397572|gb|DN230388.1|DN230388
genomic: GCCAACTTCTGAAGCAGTCGAGCAAGAAAATATGGTTCCACCACTCCGTGgtgagcactt ... acacatgcagCCATGCCAGATTT
EST: GTCGAGCAAGAAAATATGGTTCCACCACTCCGTG CCATGCCAGATTTTGCCCAAGTATACAACTTCCTGGGAAGCATATTTGATCEST: gi|110220916|gb|EC902814.1|EC902814
genomic: GTCGAGCAAGAAAATATGGTTCCACCACTCCGTGgtgagcactt ... acacatgcagCCATGCCAGATTTTGCCCAAGTATACAACTTCCTGGGAAGCATATTTGATC
EST: CCAACTTCTGAAGCAGTCGAGCAAGAAAATATGGTTTCCCCCACTCCGTG CCATGCCAGATTTTGCCCAAGTATACAACTTCCTGGGGAAGCATATTTGATEST: gi|78118283|gb|DV536669.1|DV536669
genomic: CCAACTTCTGAAGCAGTCGAGCAAGAAAATATGG-TTCCACCACTCCGTGgtgagcactt ... acacatgcagCCATGCCAGATTTTGCCCAAGTATACAACTTCCT-GGGAAGCATATTTGAT
EST: GCCAACTTCTGAAGCAGTCGAGCAAGAAAATATGGTTCCACCACTCCGTG CCATGCCAGATTTTGCCCCAGTATACTACTTCCTGGGAAGCATATTTGATCEST: gi|78076508|gb|DV504942.1|DV504942
genomic: GCCAACTTCTGAAGCAGTCGAGCAAGAAAATATGGTTCCACCACTCCGTGgtgagcactt ... acacatgcagCCATGCCAGATTTTGCCCAAGTATACAACTTCCTGGGAAGCATATTTGATC
EST: GCCAACTTCTGAAGCAGTCGAGCAAGAAAATATGGTTCCACCACTCCGTG CCATGCCAGATTTTGCCCAAGTATACAACTTCCTGGGAAEST: gi|71763063|gb|DR961000.1|DR961000
genomic: GCCAACTTCTGAAGCAGTCGAGCAAGAAAATATGGTTCCACCACTCCGTGgtgagcactt ... acacatgcagCCATGCCAGATTTTGCCCAAGTATACAACTTCCTGGGAA
EST: GCCAACTTCTGAAGCAGTCGAGCAAGAAAATATGGTTCCACCACTCCGTG CCATGCCAGATTTTGCCCAAGTATACAACTTCCTGGGAAGCATATTTGATCEST: gi|148956892|gb|EC902815.2|EC902815
genomic: GCCAACTTCTGAAGCAGTCGAGCAAGAAAATATGGTTCCACCACTCCGTGgtgagcactt ... acacatgcagCCATGCCAGATTTTGCCCAAGTATACAACTTCCTGGGAAGCATATTTGATC
EST: GCCAACTTCTGAAGCAGTCGAGCAAGAAAATATGGTTCCACCACTCCGTG CCATGCCAGATTTTGCCCAAGTATACAACTTCCTGGGAA
genomic: GCCAACTTCTGAAGCAGTCGAGCAAGAAAATATGGTTCCACCACTCCGTGgtgagcactt ... acacatgcagCCATGCCAGATTTTGCCCAAGTATACAACTTCCTGGGAA
ttttccttcactgcaaatgtatcttacttctccttcgccgtggttacacatgcagCCATGCCAGATTTTGCCCAAGTATACAACTTCCTGGGAAGCATATTTGATCCGGATACAAGTGGGCATTTGCAGAGGTTAAAAGCGATGGATCCAGTTGA
atcttac putative branch site (score: 69)
aaatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgcatcatcatatctttaaagtatatctcttagtgtgaatgcattttttccttcactgcaaatgtatcttacttctccttcgccgtggttacacatgcagCCATGCCAGATTTTGCCCAAGTATACAACTTCCTGGGAAGCATATTTGATCCGGATACAAGTGGGCATTTGCAGAGGTTAAAAGCGATGGATCCAGTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA