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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacgtctgctgcggatttcagttaacatgtttgattgctagctccaagctaagtatggccttcctgttaattttacagATTGCGGTAGCTCCGAGAAGAGGACCACCAGATTGCTGAAAGCCTGAAACAGCGACAAAATTCTGATCATTTGGAAT

Basic information

species Zea mays
transcript GRMZM2G057067_T04
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32795229|gb|CD947465.1|CD947465
EST:     AGGAGCTCGGAGCTTGCCAAAGGTTTGGTAGGCACAAGGCCACNNCTCAG                         ATTGCGGTAGCTCCGAGAAGAGGACCACCAGATTGCTGAAAGCCTGAAAC
genomic: AGGAGCTCGGAGCTTGCCAAAGGTTTGGTAGGCACAAGGCCAC--CTCAGgtgacgtctg ... aattttacagATTGCGGTAGCTCCGAGAAGAGGACCACCAGATTGCTGAAAGCCTGAAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacatgtttgattgctagctccaagctaagtatggccttcctgttaattttacagATTGCGGTAGCTCCGAGAAGAGGACCACCAGATTGCTGAAAGCCTGAAACAGCGACAAAATTCTGATCATTTGGAAT
                                         tgttaat  putative branch site (score: 3)
                                         tgttaatttta  TA-rich tract