1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gcaagcatattcagcacgccatagtgaaatttactcccaagtgatctagttcgctcatctaatttaattttctcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGGAGCTTTCATCACACTGATGCAAAATACGAGTTTAAAGCCATTACACACC
species | Zea mays |
transcript | GRMZM2G056944_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATTGTGGCTCTACTGCATGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGGEST: gi|50333273|gb|CO528399.1|CO528399
genomic: ATTGTGGCTCTACTGCATGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagcatat ... tcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
EST: CTGGATGACAAGAG GATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTTTAGGEST: gi|166431836|gb|EG289982.1|EG289982
genomic: CTGGATGACAAGAGgcaagcatat ... tcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
EST: ATTGGGGCTCTACTGCATGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTEST: gi|78116868|gb|DV535255.1|DV535255
genomic: ATTGTGGCTCTACTGCATGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagcatat ... tcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTT
EST: ATTGTGGCTTTACTGCATGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGGEST: gi|149069897|gb|EE158294.2|EE158294
genomic: ATTGTGGCTCTACTGCATGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagcatat ... tcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
EST: ATTGTGGCTTTACTGCATGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTTTAGGEST: gi|4573154|gb|AI438507.2|AI438507
genomic: ATTGTGGCTCTACTGCATGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagcatat ... tcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
EST: TACTGCATGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGGEST: gi|166604134|gb|EG222272.1|EG222272
genomic: TACTGCATGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagcatat ... tcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
EST: GTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGGEST: gi|60341251|gb|DN208224.1|DN208224
genomic: GTCTTGGTGTACCACTGGATGACAAGAGgcaagcatat ... tcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
EST: ATTGTGGCTCTACTGCATGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGGEST: gi|148987020|gb|EE030843.2|EE030843
genomic: ATTGTGGCTCTACTGCATGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagcatat ... tcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
EST: ATTGTGGCTCTACTGCATGACAGTCTTGGTGTACCACTGGATGACAAGAG GATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
genomic: ATTGTGGCTCTACTGCATGACAGTCTTGGTGTACCACTGGATGACAAGAGgcaagcatat ... tcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGG
aatttactcccaagtgatctagttcgctcatctaatttaattttctcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGGAGCTTTCATCACACTGATGCAAAATACGAGTTTAAAGCCATTACACACC
tttaattttctcct CT-rich tract
tcatctaatttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagcatattcagcacgccatagtgaaatttactcccaagtgatctagttcgctcatctaatttaattttctcctgatcagGATTGAGTATTCAAACCAGGTTGGAGACATTCAGGTTGAATGGGCTCTAGGAGCTTTCATCACACTGATGCAAAATACGAGTTTAAAGCCATTACACACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT